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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATTGCATCGGAAAATCAGCCTGTGAGATGGACTACACCACTTGGACTTCCTGTAGTGCAACCTTACCGCAAATTAGGGAGGCATTTGgtgagtgtagtgatttgtagaaacacacacaaaataaataccattatatcctttaatgtttataaactcaaacaggccattgcatgtcattttactttcttctttgttaaattgagtgcag

Basic information

species Vitis vinifera
transcript Vv14s0083g00790.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g00790.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA18G51160.1 (Glycine max), 5'ss of exon 15
ATAATTGCATCGGAAAATCAGCCTGTGAGATGGACTACACCACTTGGACTTCCTGTAGTGCAACCTTACCGCAAATTAGGGAGGCATTTGgtgagtgtagtgatttgtagaaacacacacaaaataaataccattatatcctttaatgtttataaactcaaa-caggccattgcatgtcattttactttcttctttgttaaattgagtgcag
 ||||||| || |||||||| || ||| | ||||| || || |||||||||||||| |||||||||||||| ||| |||| | |||| | ||||||| | ||   | |                ||| |||   | |    |  | |   ||  |  ||||  ||  |  | |  |   | | || | |  |  |||||| || |  |||||
GTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATTgtgagtgcaatgggattt-----------ttttttaattacatctcttctttcaagttcctaggatttcaaggcattctttaggttaatagtctattattattattgttatat-ggttgcag

upper sequence: Vv14s0083g00790.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: PP1S256_41V6.1 (Physcomitrella patens), 5'ss of exon 16
ATAATTGCATCGGAAAATCAGCCTGTGAGATGGACTACACCACTTGGACTTCCTGTAGTGCAACCTTACCGCAAATTAGGGAGGCATTTGgtgagtgtagtgatttgtagaaacacacacaaaataaataccattatatcctttaatgtttataaactcaaacaggccattgcatgtcattttactttcttctttgttaaattgagtgcag
|| ||||| ||  |     |  ||||||  |||||||| || ||||||||||| || |||||||||||||||||    || || ||||||||  | | ||         |||| |    ||   |     || |||     ||| |||| || ||  |   || |  | | |    ||  |  |   | | |||      ||         
ATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTGgtatgggcag---------gaaatatcttcattgt---ctcctttag---ttttgatgtctacaacattgcacggttcttggtgcatccatacagcatgtacttgaccgtatatg------