1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTCAGGAGGAAAGGCGAAAGGACAGGGAACCGGCACTGTCCTTATCGTAACTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaacctgttcttccttttgggtttttctcttcatttccactagatcttaatatgtcatgtgtaatgtcagctgatgctttgttaccatgaaatg...
species | Vitis vinifera |
transcript | Vv14s0068g00720.t01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGAEST: gi|110381283|gb|EC946607.1|EC946607
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGAEST: gi|161721331|gb|FC070058.1|FC070058
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAEST: gi|30256375|gb|CB972218.1|CB972218
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGA
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGGAGGAAAGGCGAAAGGACAGGGAACCGGCACTGTCCTTATCGTAACTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaacctgttcttccttttgggtttttctcttcatttccactagatcttaatatgtcatgtgtaatgtcagctgatgctttgttaccatgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa