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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtgactgctgcctctattaattgaatatataatatcataatcactgatcttacattttttggtaaccaatcttgtatctttccacaccgca...

Basic information

species Vitis vinifera
transcript Vv13s0067g01290.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 15
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtgactgctgcctctattaattgaatatataatatcataa--tcactgatcttacattttttggtaaccaatcttgtatctttccacaccgca----
|||||||| || |||||||| |||||||| ||||||||||| || |||||  ||||||  ||||| |||||||||||||| |||||||| |  | | | | |  |  |  |    | |   ||| ||||| | |    |   |    | | |||   | ||  |    |||     |  |||      |    
GGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAGgtatccttt-taattcatttcaatgcatagtcggtatgtaatacctttgcttttttaccatgaaattcagttgtgtcttgccttac-catgcccattttttaacag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtgactgctgcctctattaattgaata-tataatatcataatcactgatcttacattttttggtaaccaatcttgta-tctttccacaccgca-------------------------------------------
|||||||| || |||||  | |||||||| ||||||||||||||||||||  | || |  || || || ||||||||||| |||||||| | || ||| | |  |  |  ||| ||||   |  | || ||  |||   |   ||  |   || | ||| |||    | || | |  ||  |  |  ||                                           
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgt-attattagca-tataaattcttttctgtagtagtatataaa---attctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 15
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgtta-----tgtgact--gctgcctc------tattaattgaatatata-atatcataatcactgatcttacattttttggtaaccaa---tcttgtatctttccacaccgca-------------
|| ||||| ||||||||  |||||||||||||||||||||||||| | ||  ||||||  || || ||||||||||||||||||||||||  |||     ||||| |  ||    |       |||||||   |||| |   | ||||||||| |||| |   | |   ||||     |   | ||||   ||||||    |               
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattttgatgaatattaatatgatatttttgtttcataatcattgatttagtactgaatggttcttgaaattattgttattttccatttggttacttcctgctcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 15
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtg-------------actgctgcctctattaattgaatatataatatcataatcactgatcttacattttttggtaaccaatcttgtatctttccacaccgca----------------
|| ||||| ||||||||  |||||||||||||||||||||||||| | ||  ||||||  || || ||||||||||||||||||||||||  |||| ||             | |        |||||||   |||| |  | |||| |||| |||| |   | |   ||||     |  || |   | |   ||                     
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttcattttggttactttctgctcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 15
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtgac-tgctgcctctattaattgaatatataatatcataatcactgatctt-acattttttggtaaccaatcttgtatctttccacaccgca
|| ||||| ||||||||  |||||||||| ||||||||||||||||| ||  ||||||  || || ||||||||||| ||||||||||||  |||| |    || |    | ||||     ||   |||||| ||| ||     || | |   || ||| | ||  ||    | | | |  |    |  
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttatctactgtgattaagccattatgaagattagtaatataatattcctgcttcatgatcattattgttgacatatgaaatgtttctttatgtgg--

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 15
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtgac-tgctgcctctattaattgaatatataatatcataatcactgatcttacatt-ttttggtaaccaatcttgtatctttccacaccgca
|| ||||| ||||||||  |||||||||| ||||||||||||||||| ||  ||||||  || || ||||||||||| ||||||||||||  || | |    || |    | ||||     ||   |||||| ||| |  ||| |    |||  ||||  | |   ||    | | | |  |    || 
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttgtctactgtgattaagccattatggagattagtaatataata-ttgctgcttcatcatcattttttttatgtatgaaatgtttctttatgtggc-

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 15
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgtta------------------------tgtgact-gctgcctctattaattgaatatataatatcataatcactgatcttacattttttggtaaccaatcttgtatctttccacaccgca
||||| |||||||||||  ||||||||||||||||||| ||||||| |||  |||| |  || || || |||||||| |||||||||||  || |                        |||  ||   | | | |  || |   ||||| |  ||  ||  || |     || ||| |   ||    | |  | ||| | | || |     
GGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAGgtaggtcaatatattctgtatgcaccaatatttgtagctcattacttgttctactcctatatacagaattgtatacagtagatgtaaattatcatgtgcttatttgtctatttgtgcatattcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 15
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgt-tatgtgac-tgctgcctctattaa-ttgaatatataatatcataatcactgatcttacattttttggtaaccaatcttgtatctttccacaccgca
||||| |||||||||||  |||||||||| |||||||| |||||||||||  |||| |  || || || |||||||| || ||||||||       |   |  | |||  |  || || ||| || |  | ||      ||||         ||  | || |||   |  |   |  ||| || |     
GGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAGgtgaacacgtagaatatactgtgtacataaaattgtatct-cattacttgtttcacaagagagctatcatgtgctaatgtactt---acttttgcatattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689653|gb|EC942290.1|EC942290
EST:     AGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAG                         AGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCA
genomic: AGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatg ... tattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCA