1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GCAATCTTGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAGgtttgtgttacttttttgcagtaggcaatgtttaataattattttgttttttacccaccagggtagcccagttggtcaggccgaacactgggaagtgttt...
species | Vitis vinifera |
transcript | Vv13s0064g01360.t01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAG GTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAGEST: gi|32267592|gb|CD716555.1|CD716555
genomic: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAGgtttgtgtta ... caatttgcagGTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAG
EST: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAG GTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAGEST: gi|32248657|gb|CD714476.1|CD714476
genomic: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAGgtttgtgtta ... caatttgcagGTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAG
EST: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAG GTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAGEST: gi|32272152|gb|CD721311.1|CD721311
genomic: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAGgtttgtgtta ... caatttgcagGTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAG
EST: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAG GTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAGEST: gi|32268945|gb|CD718104.1|CD718104
genomic: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAGgtttgtgtta ... caatttgcagGTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAG
EST: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAG GTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAG
genomic: TGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAGgtttgtgtta ... caatttgcagGTCCGTCCTGGCACTCAACCTGGTCAGAAGGTAGTTTTGAAGAGAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATCTTGGGAGGAACCATTCAAGTCCCAACACTCACAGGAGATGTTGTTCTTAAGgtttgtgttacttttttgcagtaggcaatgtttaataattattttgttttttacccaccagggtagcccagttggtcaggccgaacactgggaagtgttt
- - - - GGAGGA
- - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - GAGATG