Sequence
atgc intronic sequence ATGC exonic sequenceTGATCCATAAGCAGGAGCCTCTTGTCAACGTCCTGCGCCTTCTCATTTTATTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAGgcaaggatgtacatgccaaatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattgcattttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os04g14654.3 (Oryza sativa), 5'ss of exon 16
TGATCCATAAGCAGGAGCCTCTTGTCAACGTCCTGCGCCTTCTCATTTTATTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAGgcaaggatgtacatgccaaatcatttttctaataatttag---atgtcactttttgttacagcaggatattgagaattgcat-tttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttag
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TGATACATAAGCAGGAGCCTATTGAAAATGTTCTTCGCCTTCTAGTGTTACTTTCACTTACAAATGCTGGGTTGCCAAAGAAGAATTTTGACTACTTGAGgta----tgtttatgttactt--tttgtgtattgcttttgtttgtattaaattttatgaccattatcagttcatatttttgcatctaggaggatatagtagcctta----------------------------------------
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA10G35210.2 (Glycine max), 5'ss of exon 15
TGATCCATAAGCAGGAGCCTCTTGTCAACGTCCTGCGCCTTCTCATTTTATTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAGgcaaggatgtacatgcca--aatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattgc-attttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttag---------------------------------------
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TGATCCATAAGCAGGAGCCTTTGACAACAGTCTTACGCCTTCTAATCCTATTTTCGATTACTAATTCTGGGTTGCCAAAGAAGCATTTTGACTACTTCAGgcaagctttcatgcttcattgatactttgtcctattcctttttttcattttgttacttttgtagatccttggaaattactaacctaaaatattattccctttctgccttttgtacaatatactagcaaatgttattttggagtacttagtgtattcttatatatttgtgacttccaatttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30132609|gb|CB917948.1|CB917948EST: TTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAG GAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACGCTGAACAA
genomic: TTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAGgcaaggatgt ... catggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATCCATAAGCAGGAGCCTCTTGTCAACGTCCTGCGCCTTCTCATTTTATTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAGgcaaggatgtacatgccaaatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattgcattttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA