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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttcccttgtcatttctcatattttgaacatctatgattgtggaattgtatcctgagatcatatgtttaatcttcttcag

Basic information

species Vitis vinifera
transcript Vv12s0028g03130.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 15
AATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttcccttgtcatttctcatattt----tgaacatctatgattgtggaattgtatcctgagatcatatgtttaatcttcttcag
|||||||||||| || || || ||||| || |||||||||||||||||| || | || ||||| ||||| |||||| | || |||||||| || ||||| || ||||   || |  || |      |     |||   | |   ||     | ||      | |||||  || |||| || | |||||
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGTGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtttttttattgttaccttggctcgatatgagagtatgacatatcttagtttctaaattagatctcat-tttactccttttcag

upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 15
AATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttcccttgtcatttctcatattttgaacatc--tatgat---tgtggaattgtatcctgagat---catatgtttaatcttcttcag
|||||||||||| || || || ||||| || |||||||||||||||||| || | || ||||| ||||| |||||| | || |||||||| || ||||| || ||||   || |  || |   |  |    ||     |||||    | |    ||   | || |  |    ||   |||| || | |||||
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtttttttattcttacctttgctagatacgagagtatgacacatatcttcttagtttctaaagtagatatcattttactccttttcag

upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 13
AATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagtt-cccttgtcatttctcatattttgaacatctatgattgtggaattgtatcctgagatca--tatgtttaatcttcttcag---
| | ||||| ||||| || || ||||| || | | |||||||||| |||||  | || ||||||||||| ||||||||||||||||| ||||| ||||| || |||| |  | ||  ||  |  |  |  || ||| | || |  |  | ||| | ||     ||     |  | |  ||| ||      
ACTCGACAAATATTTCCATAGTAATGATAATCCTATCATTGCTGGAGCACTGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCTgtgagttgctgtcgtgtttgattttgctgggaccatttgtgctaat--atttgcagccactcttccatcttactcagccttatttctcag

upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 13
AATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttcccttgtcatttctcatattttgaacatctatgattgtggaattgtatcctgagatcatatgtt-taatcttcttcag
  | ||||| ||||| || || || || || |  ||| ||||||| || ||  | || ||||||||||| ||||||||||||||||||||||| || || || ||||   || |  ||| | ||||   |||| ||| || |       ||    | |    ||  |        ||||  ||||
TCTCGACAAATATTTCCATAGTAACGATAATCCCGTCGTTGCTGGAGCTCTGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCTgtgagtttttttttt-tttttaatatgg-gaacctctgtg-tcacaatttttcgccattcattctcactcagctctctttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30304134|gb|CB980928.1|CB980928
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCTATCCA                         GCATTGGCACTTTT-GANTGATTACATAGGCAAAGAGGATCCATCAATCCG
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGC-TGATTACATAGGCAAAGAGGATCCATCAATCCG
EST: gi|71864029|gb|DT013084.1|DT013084
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|30304206|gb|CB981000.1|CB981000
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|110707945|gb|EE084922.1|EE084922
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|30305222|gb|CB982016.1|CB982016
EST:     AGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGC-AAGANGGATCCATCAATCCG
genomic: AGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGA-GGATCCATCAATCCG
EST: gi|30305288|gb|CB982082.1|CB982082
EST:     ATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: ATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|71860625|gb|DT009680.1|DT009680
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|71863903|gb|DT012958.1|DT012958
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA