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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcagaccctaatctattttatgaacaaatgtggctatattttgtgtcaaatgtgaaactttaattttgtgtgcttctatctttgcag

Basic information

species Vitis vinifera
transcript Vv11s0052g00880.t01
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32267884|gb|CD717043.1|CD717043
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|27582064|gb|CB004759.1|CB004759
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|32270252|gb|CD719411.1|CD719411
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|56409444|gb|CX017696.1|CX017696
EST:     GGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: GGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|30324587|gb|CD007849.1|CD007849
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|30326071|gb|CD009333.1|CD009333
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|352774216|gb|FQ474739.1|FQ474739
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|30300181|gb|CB976975.1|CB976975
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGATGAGCTGAATGGCTTTGGTGGATCTG
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTG
EST: gi|110699884|gb|EE077290.1|EE077290
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|30322494|gb|CD005756.1|CD005756
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
EST: gi|32271899|gb|CD721058.1|CD721058
EST:     CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG                         GACTACATTTATGAAGACGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC
genomic: CAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATGgtaagtcaga ... atctttgcagGACTACATTTATGAAGATGAGCTGAATGGCTTTGTTGAATCTGGTGCGCTC