Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATGGTAATGGTGAGATACGATATTGGAGTATCCCCAATGGTAGTTGTACTAGGGTCTTCAAGgtatataacagtggaactatctatttgttcaactctacaaagaaactttacattgcagaatgctatttcttttgatcatccagcttccattaagttgatgattctaatcttccttatcttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04550.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G12900.1 (Glycine max), 5'ss of exon 18
---CTTCCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATGGTAATGGTGAGATACGATATTGGAGTATCCCCAATGGTAGTTGTACTAGGGTCTTCAAGgtatataacagtggaactatctatttgttcaactctacaaagaaactttacattgcagaatgctatttcttttgatcatccagcttccattaagttgatgattctaatcttccttatcttttcag
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AGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCTTGTGAC---AATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGgtatggaat--ctaaaata---agttgtgaagctc---------atcctaattctcaatgtattgct-------ataatttgattgcaaataacttaatt-ttccaatatt--ttatcag-----
upper sequence: Vv11s0016g04550.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA05G08110.1 (Glycine max), 5'ss of exon 15
---CTTCCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATGGTAATGGTGAGATACGATATTGGAGTATCCCCAATGGTAGTTGTACTAGGGTCTTCAAGgtatataac--agtggaactatctatt-tgttcaactctacaaagaaactttacattgcagaatgctatttcttttgatcatccagcttccattaagttgatgattctaatcttccttatcttttcag
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AGATTTTCACCCTAGCCAAGATGACCTTATTTGCTCTTGTGAC---AATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTCTCAAGgtatgaaatctaaaaaagttgttaagcacatcctaattctcaatgtattgttataattt-gattgcaaataacttatttttccaatattttatcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71867165|gb|DT016220.1|DT016220EST: AGATACGATATTGGAGTATCCCCAATGGTAGTTGTACTAGGGTCTTCAAG GGTGGAACGAACCATATGAGGTTTCAACCTCGCCATGGAAGGTATCTGGCT
genomic: AGATACGATATTGGAGTATCCCCAATGGTAGTTGTACTAGGGTCTTCAAGgtatataaca ... atcttttcagGGTGGAACGAACCATATGAGGTTTCAACCACGCCATGGAAGGTATCTGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATGGTAATGGTGAGATACGATATTGGAGTATCCCCAATGGTAGTTGTACTAGGGTCTTCAAGgtatataacagtggaactatctatttgttcaactctacaaagaaactttacattgcagaatgctatttcttttgatcatccagcttccattaagttgatgattctaatcttccttatcttttcag
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