Sequence
atgc intronic sequence ATGC exonic sequenceTATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGgtaaaacttctaagccgtttctagcactaaaataatttagcttttgaggctacttttatgaaaaaatgtttgaaatttgggaaatggactgaatcccatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 15
TATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGgtaaaacttctaagccgtttctagcacta-aaataatt--tagcttttgaggctacttttatgaaaaaatg--tttgaaatttgggaaatggactgaatcccatc
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TATAGATGCCTTGGCCAAAATGGTTGATCCTACTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaaactttgtaatgatgaaatgaacaacagatggctagcaacttgtcttagtaccttttccatttactgcactcacgcatttatttctgcactatact-----
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G00970.1 (Glycine max), 5'ss of exon 15
TATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGgtaaaacttctaagccgtttcta-gcactaaaataatttagcttttgaggctacttttatgaaaaaatgtttgaaatttgggaaatggactgaatcccatc-
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TATAGATGCCTTGGCCAAAATGGTTGATCCTACTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaagcttctctaatgaccaaatgaacaacaaatggctagcaacttgttttagtacct--attccatttactgcactcgtgcatttatttctgcactatag
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT4G22130.2 (Arabidopsis thaliana), 5'ss of exon 10
TATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGgtaaaacttctaagccgtttctagc-actaaaataatttagctt--ttgaggctacttttatgaaaaaatgtttgaaatttgggaaatggactgaatcccatc
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TATAGATGCTTTGTCTAAAATGGTTGATCCTTCTCTTAATGGCATGTATCCAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaa-taccatccaaactctggagaatgtcctaattgaacaaaaccgaaattg-ttttgtaaagtaaccatatctctctatctttctttgttaatttag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33410441|gb|CF216068.1|CF216068EST: CTGCAAAGTTTTTGTCACGTTTTGCCGACATCATTGCCTTGTGTGTTCAG CCGGAGCCAGAGTTTCGACCTCCAATGTCTGAAGTTGTGCAAGCACTGGTT
genomic: CTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGgtaaaacttc ... tttcatacagCCGGAGCCAGAGTTTCGACCTCCAATGTCTGAAGTTGTGCAAGCACTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGgtaaaacttctaagccgtttctagcactaaaataatttagcttttgaggctacttttatgaaaaaatgtttgaaatttgggaaatggactgaatcccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG