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TAATCAGCATTTTGAGAGAAAAACCTGATGTTGTGACACTGGAAATTTGCACTTCTCTCCTGCCACTCCTCACGAGTCTTCTTGAAAGTGAGATGGATAGgtaagaaatttggtactatgtgactttctgctctattgttctgcccattcagctctggttagcaaattcaccttttttccattagttccaggaaaaaaaa...
species | Vitis vinifera |
transcript | Vv10s0071g01150.t01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ACTTCTCTCCTGCCACTCCTCACGAGTCTTCTTGAAAGTGAGATGGATAG GCATTTAGGCATTTCTCTTGAGATGCTCCTTAAGCTGGTCAGGATATTTGGEST: gi|30306157|gb|CB982951.1|CB982951
genomic: ACTTCTCTCCTGCCACTCCTCACGAGTCTTCTTGAAAGTGAGATGGATAGgtaagaaatt ... catgtaatagGCATTTAGGCATTTCTCTTGAGATGCTCCTTAAGCTGGTCAGGATATTTGG
EST: AAAGTGAGATGGATAG GCATTTAGGCATTTCTCTTGAGATGCTCCTTAAGCTGGTCAGGATATTTGGEST: gi|34544471|gb|CF512703.1|CF512703
genomic: AAAGTGAGATGGATAGgtaagaaatt ... catgtaatagGCATTTAGGCATTTCTCTTGAGATGCTCCTTAAGCTGGTCAGGATATTTGG
EST: ACTTCTCTCCCGCCACTCCTCACGAGTCTTCTTGAAAGTGAGATGGATAG GCATTTAGGCATTTCTCTTGAGATGCTCCTTAAGCTGGTCAGGATATTTGG
genomic: ACTTCTCTCCTGCCACTCCTCACGAGTCTTCTTGAAAGTGAGATGGATAGgtaagaaatt ... catgtaatagGCATTTAGGCATTTCTCTTGAGATGCTCCTTAAGCTGGTCAGGATATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATCAGCATTTTGAGAGAAAAACCTGATGTTGTGACACTGGAAATTTGCACTTCTCTCCTGCCACTCCTCACGAGTCTTCTTGAAAGTGAGATGGATAGgtaagaaatttggtactatgtgactttctgctctattgttctgcccattcagctctggttagcaaattcaccttttttccattagttccaggaaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa