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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCTGGGGTCTGGACAAGAAACTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttattaagatgttatcccttccatatattaaaattcctgattcttttttccctccattttggcctttattcaataccaccgtatcataaattttctcttgtgatttccag

Basic information

species Vitis vinifera
transcript Vv09s0054g00890.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 15
GTTTTCTGGGGTCTGGACAAGAAACTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttattaagatgttatcccttccatatatt---aaaattcctgattcttttttccctccattttggcctttattcaataccaccgtatcataaa---ttttctcttgtgatttccag
|||||||||||| ||||||| || |||||||||||||| || || || |||||||||||||||||||| || ||||||||  ||||||| |||  | ||| || |  |  |   |   ||     |  || ||   | | | | |      ||||||  ||   | | |  | ||| ||  | ||   |||  | |||  || |  ||
GTTTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGgtatgtcctaaagttggttactttgtaactcatcctccagctttctacatttgtatgcatagtgttttgg--ttccatgactttccccgaatttttaatattttctttttggtatctttag

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 15
GTTTTCTGGGGTCTGGACAAGAAACTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttattaagatg-ttatccctt--ccatatattaaaattcctgattcttttttccctccattttg-gcctttattcaatacc-------accgtatcataaattttctcttgtgatttccag
|||||||||||  ||||||| || ||||| |||||||| || || || |||||||||||||||||||| || ||||||||  ||||||| |||  | ||| || |||     |  ||  ||  |  |  |    |   || | | | |  | || | |  ||  ||| ||  |       |   | | |  | |||  | |||  || |  ||
GTTTTCTGGGGGTTGGACAAAAAGCTTGCCCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGgtatgtcctcaagttggttactttgtaaccccattctccagctttctacatttgtatgcatatagttagtgttttggttccatgactttcctgatttttttaatattttctttttggtatctttag

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: PP1S10_201V6.1 (Physcomitrella patens), 5'ss of exon 15
GTTTTCTGGGGTCTGGACAAGAAACTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttattaagatg--ttatcccttccatatattaaaattcctgattcttt---tttccctccattttggcctttattcaataccaccgtatcataaattttctcttgtgatttccag
|| || ||||| || |||||||||||||||||| |||||||||| ||| | || |||||||| ||||| ||||| || ||  |   |||| | | ||    |   | || |  |||   || |    | |  |||| |||   |||   |   ||||    | |||   |  |   | ||||  |  ||                  
GTGTTTTGGGGGCTCGACAAGAAACTTGCTCAGCGGAAACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttttctctaactgattcaatcccattactttggtactagattgtttgagttttgtttgtttttcatatctatatgactctgtcttatcgaatgttgcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720887|gb|EE097200.1|EE097200
EST:     AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACG                         GCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAATATCAGG
genomic: AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttatt ... tgatttccagGCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAACATCAGG
EST: gi|110715176|gb|EE092929.1|EE092929
EST:     AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACG                         GCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAACATCAGG
genomic: AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttatt ... tgatttccagGCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAACATCAGG
EST: gi|110707093|gb|EE083190.1|EE083190
EST:     AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACG                         GCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAATATCAGG
genomic: AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttatt ... tgatttccagGCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAACATCAGG
EST: gi|37189190|gb|CF608539.1|CF608539
EST:     AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACG                         GCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAACATCAGG
genomic: AACATTTCCCATCTGTAAACTGGCTTATTTCATACTCAAAATATGCAACGgtgtgttatt ... tgatttccagGCATTGGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAACATCAGG