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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGTTGGAGTTGGTTCCAAGAGATTATGACATGGAATGCCCAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAGgtaggaatccattctctcaccctccctccctccctccctccctccttccctccctgcccttcctgagaattttggtgttgagttgatttccttcttggtaagccagctattaacggcttcaaaacaacctggatgtttaaattatgtacag

Basic information

species Vitis vinifera
transcript Vv09s0002g07530.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 16
GTTGGGTTGGAGTTGGTTCCAAGAGATTATGACATGGAATGCCCAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAGgtaggaatccattctctcaccctccctccctccctccctccctccttccctccctgcccttcctgagaattttggtgttgagttgatttccttcttggtaagccagctattaacggcttcaaaacaacctggatgtttaaattatgtacag
||||| ||||| ||| | |||||||||||||||||||| | |   || |||||  ||||| |||| ||||||||| |||||||||| || |||||  ||     ||     |  |  || |||                      |||   ||   |   ||| |   |  |   ||||||| | |||   | | |||  ||  |||    ||||       |  |                  
GTTGGATTGGAATTGTTCCCAAGAGATTATGACATGGAGTCCAGTAAGCCCTTTGGGAAAAATGATATTATCAGCCTGGTTCCTGTTTGCAAGgtgagatcatgtttatgtaatcgtccccccaaaa------------------cctattctatgtataaatgt--ataattcattgattttcatctcattgaaccatttacaaacaagatcaattttttttacag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30326937|gb|CD010199.1|CD010199
EST:     CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAG                         CATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
genomic: CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAGgtaggaatcc ... ttatgtacagCATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
EST: gi|32272114|gb|CD721273.1|CD721273
EST:     CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAG                         CATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
genomic: CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAGgtaggaatcc ... ttatgtacagCATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
EST: gi|32248906|gb|CD714725.1|CD714725
EST:     CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAG                         CATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
genomic: CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAGgtaggaatcc ... ttatgtacagCATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
EST: gi|32249415|gb|CD715234.1|CD715234
EST:     CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAG                         CATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
genomic: CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAGgtaggaatcc ... ttatgtacagCATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
EST: gi|294966003|gb|GW839342.1|GW839342
EST:     CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAG                         CATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG
genomic: CAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAGgtaggaatcc ... ttatgtacagCATGTAGGGTGCTCTTCTGCAGATGGTCGGACTTTATTGGAGTCATCGAAG