Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03640.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag
|||||||||||| ||||||||||||||||| ||||||||| | || || || |||||||| || ||||||||||| || || || || || || ||||||||   ||| |  |  ||  | |||   |   || | | | |  || | |   | ||  |||   |      | | || ||    
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccaccttttagta-actaaatagtaactcgagcttgaactctcgtgcag---

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatca--------tgaaattggtca---caacttttct-caatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag
 ||||| ||||| || ||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||| || ||||| ||| | || |||||||| | ||| |        || || |||| |   || ||||||  |||| |  | |||  ||  ||| ||     ||                    
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgagtaatttttgtaagtggttattgcaccttttcaacaattaaatattaacttaagttctcatatgcag-------------------

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 12
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag
 ||||| ||||| || ||| | |||||||| ||||| ||| | || ||||| ||||||||||||||||||||||| || ||||| || || || |||||||| | ||| | | ||||  | | || |  |    ||      || |       |   | | | ||| | | | |  |    |||
AATTGTCATGAGAACCGTGCGAAACACAGTTGACACCGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATTGACATCTTTGAGGCTTTTGATGAGgtggctatga-ggaattttttataagtagtt---attgcaccttttcagaaactaaatatta-acctaagttctcatgtg-cag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 18
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgtttt---atattgtgttgtctctcacaccgatggtattgttcatcag-------
 |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| |||||||||   | ||    |     ||    || | |   || | | ||   || |  | |  ||| | |  |  |  | | | ||| |          
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACTGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccatttgttgtgtatttcttttctttgtatctcctatcctctttaatgcttaatgaaatattcttttttcgccag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 17
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatcat----gaaattggtcacaacttttctcaatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag-------
 |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| |||||||||   | ||      |||  | |       | | ||  |  | || ||| |  | |  ||| | | ||  |  | | ||||| |          
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACAGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccgtttgttgtgtatttcttttct-ttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 17
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgta---gatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag
|||||| |||||||| ||||| ||||| || |||||||||||||| ||||| |||||||| || || || || || |||||||| |||||||| || ||||||     || |    |||| ||  ||  ||||||  |||      |  ||||   | |     | |   ||  | ||||  | |||
CATTGTGATGAGGACTGTGAGAAACACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATTGATATCTTTGAAGCCTTTGACGAGgtaccaactaactcataatttgtgtcatattttctttatc------tccattgctctttggtagataaatattttcttgtgtaccag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 16
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatcatgaaattggtcacaacttttct-caatcatgttttatattgtgttgtctctcacaccgatgg-----tattgttcatcag
|||||| |||||||| ||||| || || || |||||||||||||| ||||| |||||||| || || || || || |||||||| |||||||| || ||||||   |  |    ||   |   |  | || |    |  |  | | |||     |  ||||      |||       | |||| || |||
CATTGTAATGAGGACTGTGAGAAATACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATCGATATCTTTGAAGCCTTTGACGAGgtatcaacaaactcataatttgtatgtgttatatgtttcttctctttatctccattgctctttggtagataaacatttcttgtgcaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721191|gb|FC070409.1|FC070409
EST:     TCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAG                         CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGC
genomic: TCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatca ... tgttcatcagCTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGC