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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTACTAGTGTTCGACCTGCTGAACCCACACTATTATCCCCAACTCCTAGTCTTATTGGACTAGCTCGTTCAACTTCATGGTTTGACATGAATGGAGgtaactcactcttgcttggtagcacttattttctatcttggtctgttcatgagctgttgtgtgtcattactttatatgtgtctagttaaaattttttcattccaagctgttattgacag

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 15
GCTGGTACTAGTGTTCGACCTGCTGAACCCACACTATTATCCCCAACTCCTAGTCT-----TATTGGACTAGCTCGTTCAACTTCATGGTTTGACATGAATGGAGgtaactcactcttgct-tggtagcacttattttctatcttggtctg--ttcatgagctgttgtgtgt----cattactttatatgtgtctagttaaaattttttcattccaagctgttattgacag---------------------------
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----CAAGTGGTTGCAAAACCATTGAAGTC-TAGTGGTGTTCGGACTGCTGAATCTACAGCTTCTCCACTGGCTCGTTCATCTTCTTGGTTTGACATGAATGGAGgtagatctctctttccattttacttaatggttaatcttttgggataatttccaatgcaatttggtaaagtgtatctcttaacatcaatttaatttgtgacaattcctgctgctttgttgttggctttttgtttattgcttgttgctctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861670|gb|DT010725.1|DT010725
EST:     TAGTCTTATTGGACTAGCTCGTTCAACTTCATGGTTTGACATGAATGGAG                         GTAATTTGCCTATGACCTTTAGAACTCCTCCTGTTAGTCCTCCTCGGCCAA
genomic: TAGTCTTATTGGACTAGCTCGTTCAACTTCATGGTTTGACATGAATGGAGgtaactcact ... ttattgacagGTAATTTGCCTATGACCTTTAGAACCCCTCCTGTTAGTCCTCCTCGGCCAA