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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGATAAAGGATCGAGCAGCCCAGATGTGTGTGGGAATGAATCGTCAAAGTTAGCAGAGCCTAAAAGTATTGgtaagtgacattatctaagttttgcagagaaatatctcatgaaaaagggtttaaatctgcaatgccatttgggagagatactccaaacatatctaaagatgattattttcag

Basic information

species Vitis vinifera
transcript Vv08s0056g01250.t01
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34542901|gb|CF511133.1|CF511133
EST:     AGGTGTGTGTGGGAATGAATCGTCAAAGTTAGCAGAGCCTAAAAGTATTG                         GGGCCAGTGATAAGCAAGCAAGCATTGATGAGGGTGCTCCTAGTGACCTAC
genomic: AGATGTGTGTGGGAATGAATCGTCAAAGTTAGCAGAGCCTAAAAGTATTGgtaagtgaca ... ttattttcagGGGCCAGTGATAAGCAAGCAAGCATTGATGAGGGTGCTCCTAGTGACCTAC
EST: gi|110724144|gb|EE099716.1|EE099716
EST:     AGATGTGTGTGGGAATGAATCGTCAAAGTTAGCAGAGCCTAAAAGTATTG                         GGGCCAGTGATAAGCAAGCAAGCATTGATGAGGGTGCTCCTAGTGACCTAC
genomic: AGATGTGTGTGGGAATGAATCGTCAAAGTTAGCAGAGCCTAAAAGTATTGgtaagtgaca ... ttattttcagGGGCCAGTGATAAGCAAGCAAGCATTGATGAGGGTGCTCCTAGTGACCTAC