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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGCAATCTCATTCCAAGCGAAACCGGTGAGGGAATTGAAATGCTTGGGGGTTACCTTCATTTCTCTGCTTCAAAGAGTGTATTAGAGTTGATACGGgtaatgctccttgagagtttctcttttcatagctttctatgtgtcaaataatttgtgcttgttttctctctctctctcttggtttaattcatttttggcatatatatagatatatgaatgtattgaaccaggcttgattttgggtgatggtgctttgcag

Basic information

species Vitis vinifera
transcript Vv08s0032g01230.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G399212_T01 (Zea mays), 5'ss of exon 17
TGGCGGCAATCTCATTCCAAGCGAAACCGGTGAGGGAATTGAAATGCTTGGGGGTTACCTTCATTTCTCTGCTTCAAAGAGTGTATTAGAGTTGATACGGgtaatgct--ccttgagagtttctcttttcatagctttctatgtgtcaaataatttgtgcttgttttctctctctctctcttggtttaattcatttttggcatatatatagatatatgaatgtattgaaccaggcttgattttgggtgatggtgctttgcag
||| ||    || | ||| ||| |||| || || || ||||| |||||||||||||| ||||||||||| ||| ||||| ||    |||||||||| | ||||   |   |          | | || ||  | ||||  |      ||||||| | | |   | ||     | | | |  |     | ||  ||||   | |                                                           
TGGTGGTTCGCTTAGTCCGAGCAAAACTGGAGAAGGCATTGAGATGCTTGGGGGTTATCTTCATTTCTCGGCTCCAAAGCGTACCATAGAGTTGATTCAGgtataaccagctccactccaatatattgtctcaactttgaaaaa---aaataatatcttcaattgtttgtgttatttttgctaaaaaagttgtttttgtacct-----------------------------------------------------------

upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 17
TGGCGGCAATCTCATTCCAAGCGAAACCGGTGAGGGAATTGAAATGCTTGGGGGTTACCTTCATTTCTCTGCTTCAAAGAGTGTATTAGAGTTGATACGGgtaatgctccttgagagtttctcttttcatagctttctatgtgtcaaataatttgtgcttgttttctctctctctctcttggtttaattcatttttggcatatatatagatatatgaatgtattgaaccaggcttgattttgggtgatggtgctttgcag
||| || |||||  | || ||| |||  |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||  | ||||| ||| |||||||| ||| |       | || ||||  |||   |  | ||     |  ||    ||||||||               | | |   || ||    ||    |  |  |   |  |                                           
TGGTGGTAATCTTGTCCCTAGCAAAAGTGGTGAGGGCATTGACATGCTTGGAGGTTACCTTCATTTCTCTGCTTCAAAAAGTGTCATTGAGTTAATAAGGgtaatgttccct------ctgtcctttcccagcaaacc-tatgctttgtctttataacttgttttaaag-----------gatgtggctccttcaaagcgaggaagtgcactcacaat------------------------------------------

upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 18
TGGCGGCAATCTCATTCCAAGCGAAACCGGTGAGGGAATTGAAATGCTTGGGGGTTACCTTCATTTCTCTGCTTCAAAGAGTGTATTAGAGTTGATACGGgtaatgctccttgagagtttctcttttcatagctttctatgtgtcaaataatttgtgcttgttttctctctctctctcttggtttaattcatttttggcatatatatagatatatgaatgtattgaaccaggcttgattttgggtgatggtgctttgcag
||| || |||||  | || ||| |||  |||||||| ||||| |||||||| ||||||||||||||||||||||| || |||||  | ||||| ||| |||||||| ||| |       | || ||||  |||     |    ||  ||  |||||  || |      | |  |||  ||      |   | |    ||||    |    |  ||                                             
TGGTGGTAATCTTGTCCCTAGCAAAAGTGGTGAGGGCATTGACATGCTTGGAGGTTACCTTCATTTCTCTGCTTCGAAAAGTGTCATCGAGTTAATAAGGgtaatgttccct------ctatcctttcccagc-----aaagctctgatgctttgtctttataagggatatggctcctttaaagcgaggaagt----gcattcgcaatagttaat---------------------------------------------