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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTTGGTCAGCAGAGTCTCTTTACTACAACCCAGTTTGGCATTTTATTGTAGCGACTTGGGAAACCCTTGTTTACAGCCCTATCCTTGATCTGGACAGgtaactaacaatttcttcctttgctactcgactcaatttgatatttgacatttcttattcctgaaggatggcgttttaagggcttcctatattatgccat...

Basic information

species Vitis vinifera
transcript Vv07s0141g00110.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G305254_T04 (Zea mays), 5'ss of exon 15
TGTTTTGGTCAGCAGAGTCTCTTTACTACAACCCAGTTTGGCATTTTATTGTAGCGACTTGGGAAACCCTTGTTTACAGCCCTATCCTTGATCTGGACAGgtaactaacaatttcttcctttgctactcgactcaatttgatatttgacatttcttattcctga--aggatggcgttttaagggcttcctatattatgccat
|||| |||||||| || || || || || || |||| ||||||  | |||||  |  | ||||| |   | || ||||||||||| |||||||||||||||||          ||| | | | | | |  ||| | | |  | |   |   | ||  |  ||||  |  ||| | || |  |  |                 
TGTTCTGGTCAGCGGAATCACTGTATTATAATCCAGCTTGGCACATCATTGTTTCTTCCTGGGAGATGATCGTGTACAGCCCTATTCTTGATCTGGACAGgtag---------tctccttattccatttaactgagtatattttgccatgctactc-tgtctgactaacatgccattatttgcacag---------------

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 17
TGTTTTGGTCAGCAGAGTCTCTTTACTACAACCCAGTTTGGCATTTTATTGTAGCGACTTGGGAAACCCTTGTTTACAGCCCTATCCTTGATCTGGACAGgtaactaacaatttcttcctttgctact-cgactcaatttgatatttgacatttcttat----tcctgaaggatggcgttttaagggcttcctatattatgccat
|||||||| |||||||||| |||||||| |||||||||||||||||||| || || |||||||||||  ||||||||||||| ||||| ||||| ||||||||| |   || || ||||||||  ||| ||| |  | || || ||  |   ||   ||    | ||     |     |||||   |      ||    ||    
TGTTTTGGACAGCAGAGTCACTTTACTATAACCCAGTTTGGCATTTTATAGTTGCAACTTGGGAAACTGTTGTTTACAGCCCAATCCTGGATCTTGACAGgtaatttg-aactttttcctttgacacttcgagttgaatttatgttaaaacctttgcatcagttgcttttaaaatctattttagatgtagttgattggttg----

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA10G03660.1 (Glycine max), 5'ss of exon 17
TGTTTTGGTCAGCAGAGTCTCTTTACTACAACCCAGTTTGGCATTTTATTGTAGCGACTTGGGAAACCCTTGTTTACAGCCCTATCCTTGATCTGGACAGgtaactaacaatttcttcctttgctactcgactcaatttgatatttgacatttcttattcctgaaggatggcgttttaagggcttcctatat-tatgccat------
|||||||| | |||||||| |||||||| |||||||||||||||||||| || || |||||||||||  ||||||||||||| ||||| ||||| ||||||||| |   | ||| | | || ||   |||| |  | || || ||  |   ||   ||          | || ||| ||   | |  || || ||    ||      
TGTTTTGGACGGCAGAGTCACTTTACTATAACCCAGTTTGGCATTTTATAGTTGCAACTTGGGAAACTGTTGTTTACAGCCCAATCCTGGATCTTGACAGgtaatttgaactttttccattggcacttcgaattgaatttatgttaaaacctttgcatc-------agttgcttttaaaatccattttagatataattgattggttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110381904|gb|EC937969.1|EC937969
EST:     GTAGCGACTTGGGAAACCCTTGTTTACAGCCCTATCCTTGATCTGGACAG                         ATGGGCCATTCCCATTTGTGTGTTAGTGGCAATATTAGTACTTTACTGGCG
genomic: GTAGCGACTTGGGAAACCCTTGTTTACAGCCCTATCCTTGATCTGGACAGgtaactaaca ... tttgtgacagATGGGCCATTCCCATTTGTGTGTTAGTGGCAATATTAGTACTTTACTGGCG