Sequence
atgc intronic sequence ATGC exonic sequenceGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAGgtagtatctctttcaattatggaatcgctagccctatgtaatttctaactgtaggttgtttgggcttacatatcggcttaatagattgggtaaataaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA10G31880.1 (Glycine max), 5'ss of exon 16
GAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAGgtagtatctctttcaattatggaatcgctagccctatgtaatt--tctaactgtaggttgtttgggcttacatatcggctta-atagattgggtaaataaatt--
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GGGCAAAGCAACCAATCTATCTTGTCAATGCTGATGATGTTGGTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAGgtacttttttcatc--ttactataatggcagtcttacatatgtatgccaaaaatgagtgaattg---ttatagtggggcttgtatttattatgttacgggatttg
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 5'ss of exon 15
GAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAGgt-agtatctctttcaattatggaatcgctagccctatgtaatttctaactgtaggttgtttgggcttacatatcggcttaatagattgggtaaataaatt--
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GAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAGgttaatatttttttgtatgaatgagattata-tgttgagtggttcttttctgtggaatactggaatcttgatatggattt--tagtttccattatttacctca
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 5'ss of exon 16
GAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAGgtagt---------atctctttcaattatggaatcgctagccct-----atgtaattt-ctaactgtaggttgtttgggcttacatatcggcttaa-ta-gattgggtaaataaatt-------------------------------------------------------------------------
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GAGCAAAGAGGCCCGATTATCTTGTCACAGCCGATGATGTTGATTTATACCTTGCTATTGAAGTTCACCCCTTGGATGACAAGAACCGCAAGgttttttttactaaatcttttctgatgaataagaaaatacttctaaagcatccaattcactttttgtggagaacatatgatcagcccctatttcaaatatgtttggggactttaatattgtgctagatgtgattaccatttcgttacctgtctggattttttattcgtctgcttttctttcggaatctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30130582|gb|CB915921.1|CB915921EST: ACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG GGAGAACTTGTAAAGGTCTTTGCAAATGAGCACAGGAAGATCACTTGTG
genomic: ACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAGgtagtatctc ... tgaactccagGGAGAACTTGTAAAGGTCTTTGCAAATGAGCACAGGAAGATCACTTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAGgtagtatctctttcaattatggaatcgctagccctatgtaatttctaactgtaggttgtttgggcttacatatcggcttaatagattgggtaaataaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa