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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTGGATGCTACATAGACCAGAGTCAAAGCCTGAATATACACATGGACCAACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatcaacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggacacaaaag

Basic information

species Vitis vinifera
transcript Vv07s0031g01990.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 15
CCGTGGATGCTACATAGACCAGAGTCAAAGCCTGAATATACACATGGACCAACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatc----aacttctttca---cttatgcttga--------tgatgcatagctgtaatg-gttcataaagtggttta------ctaatcttcttatgttgtttcttcct---gttcatggacacaaaag---------------------
 |||||||||||||| || ||||| || || || ||| | |||||||| |||||||| ||||| || || || ||  |||||||  |||| |||||||||||||     |   | | | |   | ||| | |||             ||||  | |  ||  ||  | | |   |  |      ||  | |  |||  |||| | ||      ||  |     | | | |                     
TCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGgtattattaaggctatgtgaaagcatattcctgaactctatgcagcccatatttattctgtatttgtcatgccatgaaaaagaactgctgtctttagattgtgtttttgcaaggtctacaagtaaacatggtttcatcttggttgatttag

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 15
CCGTGGATGCTACATAGACCAGAGTCAAAGCCTGAATATACACATGGACCAACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatcaacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggacacaaaag
 || |||||||||||||| ||||| |||||| | ||||| |||||||| ||||| || ||||||||||| || |||||||||||||||||||||||||||||| ||||    |  |||| ||||||    || |  |   |||   |   |||  ||    | ||  |   |    ||  || ||     |  |  |        
TCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacacagt--acttttgcttgcctgtgaagtgagataaatttatgtaatatgtgcaaatatacagttgggtttaattgttttatgttgtctattttg---

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 15
CCGTGGATGCTACATAGACCAGAGTCAAAGCCTGAATATACACATGGACCAACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatcaacttctttcact---tatgcttgatg--atgcatagctgtaatg-gttcataaagtggtttactaatcttcttatgttgtttcttcc-tgttcatggacacaaaag
  | ||||||||||||||||||||||| ||| ||||||| |||||||| ||||| || ||||||||  | || || |||||||| ||||||||||| |||||||| || |  |||  |   | |  || |||  ||   |   || | || ||||||   ||   | |  ||   | || |||  ||  |    |||||             
TAGAGGATGCTACATAGACCAGAGTCAGAGCTTGAATATTCACATGGATCAACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgaccttcttccttgggtctagttaatgtcatttttcattggattgtgttcatgttgtctctaataaaggattttgtgtgtttggtagtatgttct------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 15
CCGTGGATGCTACATAGACCAGAGTCAAAGCCTGAATATACACATGGACCAACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatcaac----ttctttcacttatgcttg------atgatgcatagctgtaatggttcataaa---gtggttta--ctaatcttcttatgttgttt-cttcctgttcatggacacaaaag-----------------------------------------------------------------------------
 || |||||||||||||| ||||| |||||  | ||||| |||||||| ||||| || |||||||| || || ||||||||||| |||||||||||||||||| ||||    | ||||  ||| ||  ||      | |||  ||   ||||  | |  | |||    | |||     |||   |  |||||||| |  ||  | | | |||  |   |                                                                               
TCGAGGATGCTACATAGATCAGAGCCAAAGTTTAAATATTCACATGGATCAACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGgtagcaacacagtgcttttgcttgtgtgtgtgaagcaagataaatttatgtag-gatgtacaaatatatagttgggtttaaatgttatatgttgtctattttgtttccttggtgatttacattattctttacacagttggggaattttaggccaaatgtttgctgatcaattttatgctttttgtttggtcatgaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122691528|gb|EC979583.1|EC979583
EST:     AACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAG                         GGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCC
genomic: AACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatcaactt ... gacacaaaagGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCC