Sequence
atgc intronic sequence ATGC exonic sequenceGTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattttagatttgaagtggtggatgtgagtaaaatcctataattttactttagttttctcatctgtgtgtgtgtaatccttcatctgtacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 13
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattttagatttgaagtggtggatgtgagtaaaatcctataattttactttagttttctcatctgtgtgtgtgtaatccttcatctgtacag
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GTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACGTCATGAATCTCGCAGAATTGATAATCAGgtaatatactgattga-gctatcatt----gtttgcaa--gcaaatt---gcaagattctgcc-tttgacacaagctctttccgtattttgcatatgatcat--ggtcaaact-
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 15
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattt-tagatttgaagtggtggatgt----gagtaaaatcctataattttac---tttagttttctcatctgtgtgtgtgtaatcctt-catctgta-cag---------------------------------------------------------------------------
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GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttt---ttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttctattattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 15
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattt-tagatttgaagtggtggatgtgagtaaaatcctataattttactttagttttctcatctgtgtgtgtgtaatccttcatctgtacag
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GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttt---ttttatctttccttttccttgtagggttgaaaggtgggaagccggga------tgtaatggcttgtggccttggacatccacatatctcctaccctct-tcta-----
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattttagatttgaagtggtggatgtgagtaaaatcctataattttactttagttttctcatctgtgtgtgtgtaatccttcatctgtacag
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GTGGTGGAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAATCAGgtttccttaatagatttgtttcaagg--agattta---tggttgattcaggttcctttctcag---tgaaataaatcttcttcactatgttt------tgttcccctcatacag
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: PP1S9_141V6.1 (Physcomitrella patens), 5'ss of exon 14
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattttagatttgaagtggtggatgtgagtaaaatcctataattttactttagttttctcatctgtgtgtgtgtaatccttcatctgtacag
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GTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAAGGCGAATTGACAATCAGgtaa-----tttttcagatattaactaggaaaaagcattggttta-ataaccacgtttctaaaaatgtgagtcaagacggcag--aatttgcacgaagaccacaatgc------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720527|gb|EE096525.1|EE096525EST: TTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAG TTGCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTC
genomic: TTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagttt ... atctgtacagTTGCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattttagatttgaagtggtggatgtgagtaaaatcctataattttactttagttttctcatctgtgtgtgtgtaatccttcatctgtacag
- - - - - - - - - - - - TGGTGG