Sequence
atgc intronic sequence ATGC exonic sequenceTAACTTTGGTAGACTGCATGATAGAAGCAAAGAAACCCCCAAGACAATGAAGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcctacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 12
TAACTTTGGTAGACTGCATGATAGAAGCAAAGAAACCCCCAAGACAATGAAGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcctacattcagtttatgacgaggt----ggtgcttct--ctggttacctgaaggaagta-ataaaatgtttgtgagaattgttgcag
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TAACTTTAGTAGACTGCATGATAGAAGCAAAGAAACCTCAAAAGTTATGAAGCAACTTAATCGCCTTTTTCCAAACAAAGTGACCATACAGTTGCCTCAGgtatcgtgt-tatattaatttgattttgcaatttataatgttgctaacttgctatttacaattcatatatctgtttcggttccaaacttgtacag
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 15
TAACTTTGGTAGACTGCATGATAGAAGCAAAGAAACCCCCAAGACAATGAAGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcctacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcag
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TAACTTTGGTAGACTGCATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGTCGTCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGgt-ttgatgttagattaactttattatgaaat--ttattccgttgctatatacagttcaagtatccattttaattcaacttgt-acag
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA10G02410.1 (Glycine max), 5'ss of exon 12
TAACTTTGGTAGACTGCATGATAGAAGCAAAGAAACCCCCAAGACAATGAAGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcc---tacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttg--tgagaattgttgcag
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TAACTTTAGTAGACTGCATGATAGAAGCAAAGAAATCTCAAAAGTTATGAAGCAACTTAGTCGCCTTTTTCCAAACAAAGTGACCATACAGTTGCCTCAGgtatcatgttatattattttggttttgcaaattataatg-ttgttaacttgctatttaccattcatatattgtttggttccaaacttgtacag
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 11
TAACTTTGGTAGACTGCATGATAGAAGCAAAGAAACCCCCAAGACAATGAAGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcctacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcag
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TAACTTTGGTAGACTGCATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGTCGTCTTTTCCCAAACAAAGTGACAATACAGTTGCCTCAGgt-ttgatgttagattaacttcaatatgaaat--ttattccattggtatatacagttcatgtatccat-tttaaatcaacttgtacag
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 5'ss of exon 15
TAACTTTGGTAGACTGCATGATAGAAGCAAAGAAACCCCCAAGACAATGAAGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcctacattca--gtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcag
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TAATTTTGGTAAACTGCACGATAGAAGCAAAGAAACACCTAAATCAATGAAACAAATAACTCGACTATTTCCTAACAAAATCGCCATCCAGTTACCTCAGgttgtta-ccttcattcatgatttcttgtctgg-gataattttatttttcctttttcttatgctccgaagatgtaatag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110727315|gb|EE103938.1|EE103938EST: AGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAG GATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAA
genomic: AGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcc ... attgttgcagGATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAACTTTGGTAGACTGCATGATAGAAGCAAAGAAACCCCCAAGACAATGAAGCAACTCACTCGGCTTTTTCCAAACAAAGTGATGATACAGCTGCCACAGgtattgagcctacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC