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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATATGGGTTTACAGCTGTGGACAGGCCAGAAGGTTTCTTGGTTTTGGCTGTTGTTTCTCTGGGAGACCAAGTCAATGAGTATAAGAATCCACCTGAGgtatgtgaacttggttgccaagctatagaatgaacgaaatattttgctctccccatggaatcctggaaagccttacaaattaataaaagcag

Basic information

species Vitis vinifera
transcript Vv06s0080g00260.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00260.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA11G19070.1 (Glycine max), 5'ss of exon 15
TAGATATGGGTTTACAGCTGTGGACAGGCCAGAAGGTTTCTTGGTTTTGGCTGTTGTTTCTCTGGGAGACCAAGTCAATGAGTATAAGAATCCACCTGAGgtatgtgaacttggttgccaagctatagaatgaacgaaatattttgctctccccatggaatcctggaaagccttacaaattaataaaagcag
 |||||||| |||||||||||||||||||||||||| ||||| ||||||||  ||| |||||| ||| |  |  | |  ||||  || |  |||||||||||||   || |    |         || | | | |        || | ||| |      |   |  |     || |||| | ||     |||
AAGATATGGTTTTACAGCTGTGGACAGGCCAGAAGGGTTCTTAGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAAGCCCACCTGAGgtatccaaaatgcact---------tatattcaccttttggcctttcactcacagaaccaatatatatttggtttcaaaattattgtcacag

upper sequence: Vv06s0080g00260.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA12G09390.1 (Glycine max), 5'ss of exon 16
TAGATATGGGTTTACAGCTGTGGACAGGCCAGAAGGTTTCTTGGTTTTGGCTGTTGTTTCTCTGGGAGACCAAGTCAATGAGTATAAGAATCCACCTGAGgtatgtgaacttggttgccaagctatagaatgaacgaaatattttgctctccccatggaatcctggaaagccttacaaattaataaaagcag
 |||||||| ||||| |||||||||||||||||||| ||||||||||||||  ||| |||||| ||| |  |  | |  ||||  || |  |||||||||||||   || |    |   |||  |     | |||      |||  |||  |  ||  |    ||       || |||| |  |  |  |||
AAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGATTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAGgtatccaaaatgcact--taagtcaccttttcaac------tttcactcaactaatatatatttg------ttttcaaaatttttgacacag