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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatattttatttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag

Basic information

species Vitis vinifera
transcript Vv06s0061g01190.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 15
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatatttt-atttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag
|||| ||||| || |||||||| |||||||| |||||||||||||| ||||||||| |||||||||| | | |  |  | ||  |||| ||||| ||||||||  || |  | | |||        |  ||||||  || | |||        ||| | ||||   |||||| | || ||| | ||||| |  |  |  || |                                            
TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtagattatgctcactgt--------tccttatttatctctgaat--------tttgtttacttggtatattctgatctttatcttttgattccactgctacag-------------------------------------------

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G057504_T01 (Zea mays), 5'ss of exon 4
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatattttatttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag
|||| |||||||| || ||||| ||||||||||||||||||||||||||||||||  |||||||||| | | | ||  | ||  |||| ||||| ||||||||  || |  || |      ||  | | ||  ||   | |||| | ||| |   |   |   |  | | |  | |  ||   |||  || |  || ||  |                                            
TTGAGGATGCAGTATTAACTCCCTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTATCTAGTTGGCGGAGTGCGACAGCAGGCCTTTGTCCTGTCTGTAGgtattttatgtttcaatcttctgtctctctttgtt--ttcttaaagtattct---tccatgtcaact-tgtcatgtccttcactttgattata-ttattgcag-------------------------------------------

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 15
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatattttatttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag
|||||||||||||||| || ||||||||||| || |||||||| || || |||||| | |||||||||||| | || ||||| || || ||||||||||||||   |  || |  |  || | |  || ||   |  ||| || |  | |||  ||         | | | ||   |||  |    |  | | |   | |   | |  | |  ||| |  |   ||||  ||   |   |||||||
TTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGgtattatcaagcttct-ccattagaatt-ttggatatcttctatttaactttgattgaaggaagttcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttattttacag

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 16
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatattttatttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag
|||||||||| ||||| || ||||||||||| || |||||||| || || |||||| | |||||||||||| | || ||||| || || ||||||||||||||   |  || |||   || | |  || |    |  ||| || |  ||||    |         | | | ||   |||  |    |  | | |   | |   | |  | |  ||| |  |   ||||  ||   |  ||||||||
TTGAAGATGCTGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaagctaac-ccattagaattttcgact--cttctatttaatttggactgaaggaagttcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttactttacag

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 15
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatattttatttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag
|||| ||||| || || || || ||||||||| | ||||| || |||||||||||||| |||||| ||||| | |||||||| || || ||||| |||||||| |||  ||||  |        |  || | ||   || ||  ||  |   ||   ||| ||   ||   | || ||| |    |  |      |     ||| |  ||||  |                               
TTGAGGATGCTGTATTAACGCCATGTGCTCATAGATTATGTCGTGAGTGTCTCTTGGCAAGTTGGAGAAATTCTACTTCTGGGTTATGTCCTGTGTGTAGgtatcttgaagttgttcctgcgattactagttttcttctgttgttgattccaatgagtgt-ctgagtaaggtctaatttggcaaataatgaatgatg----aatcgtttttttcag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30253382|gb|CB970933.1|CB970933
EST:     CTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTG-A-                         -A-GACCATCAGTAGGCAAGATCTTATTACAGCTCCGACTGGAAGTCGATT
genomic: CTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtacctttta ... ctctttacagGAAGACCATCAGTAGGCAAGATCTTATTACAGCTCCGACTGGAAGTCGATT