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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGATCTTTTGAGAGAGCAAGTCTTCATCCTTGGACGGATGGGAAATTCAAAACAAGCCCTTGCTGTAATCATTAATCAATTAGGGGATATAGAAGAGgtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacag

Basic information

species Vitis vinifera
transcript Vv06s0061g00940.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 15
AAGGGATCTTTTGAGAGAGCAAGTCTTCATCCTTGGACGGATGGGAAATTCAAAACAAGCCCTTGCTGTAATCATTAATCAATTAGGGGATATAGAAGAGgtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacag
||| || || ||||| ||||||||||||||||| ||| |||||||||| || ||||||||||| ||||| || |||||  |||| ||||||||||| ||||||| ||  |  || || ||||        | |||   ||||  |||  | |   ||  || | || |   |   || | ||  |  ||||       | |||||||  ||||  |  |       ||||||             
AAGAGACCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTAGCTGTTATTATTAACAAATTGGGGGATATAGAGGAGgtacatt--atttttttcagtt--------gaattggtttttggtttcaacaaacat--ctaacttgtgaatcagaact-ctggtgatttta------agtttgaag--tggtcatagt-------tttttgcag----------

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 15
AAGGGATCTTTTGAGAGAGCAAGTCTTCATCCTTGGACGGATGGGAAATTCAAAACAAGCCCTTGCTGTAATCATTAATCAATTAGGGGATATAGAAGAGgtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacag
||| || || ||||| ||||||||||||||||| ||| |||||||||| || ||||||||||| ||||| || || ||  |||| ||||||||||| |||||||       ||| |||  |||| |   || |||   ||||  |||  | |   ||  || | || |   |   || | ||  |  ||||       | ||||||||  |||  | ||       ||||||             
AAGAGACCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGgtac-------attattt--tttttcaattgaattggtttttggtttcaacaaacat--ctaacttgtgaatgagaact-ctggtgatttta------agtttgaagc--ggtcataat-------tttttgcag----------

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 15
AAGGGATCTTTTGAGAGAGCAAGTCTTCATCCTTGGACGGATGGGAAATTCAAAACAAGCCCTTGCTGTAATCATTAATCAATTAGGGGATATAGAAGAGgtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacag
 |  ||| |||| ||||||||||| ||  |||| ||| ||||||||||| |||||||||| ||||| || ||||| ||| || | || ||||||||||||||  || | |    || |   ||       |||     | ||  ||  | ||         |  || |    |  ||||  | | | | |  |     |||   ||     |   || |||   | |||   ||||  |   |||
GAAAGATTTTTTAAGAGAGCAAGTGTTTGTCCTGGGAAGGATGGGAAATGCAAAACAAGCTCTTGCAGTCATCATAAATAAACTGGGAGATATAGAAGAGgtgattgtta----ctgtgtgttca-----gtaactgctcttttttccgcaa--------ccccttgtacactctaattgatgtctttctgactggtaattaataaaacaagctatggtggttgactttgattgatattctgcag