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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGAGTTGTATGATTTTGATGATGAAAAGgtagaagcatttttattctcttgctagataggcttaattattgttttcccttgatactggttttaggcacattggataatctaataagtattgattatctattctttgctttctgttgatgtag

Basic information

species Vitis vinifera
transcript Vv05s0020g01780.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 15
CTGCTGAGTTGTATGATTTTGATGATGAAAAGgtagaagcatttttattctcttgctagataggcttaattattgttttcccttgatactggttttaggcacattggataatctaataagtatt-gattatctattctttgctttctgttgatgtag------
|||||||||||||||||||||||||||| ||||||     |  | |  ||| ||||||  || |    ||  || || |  ||  ||  ||   | |  | |  ||      ||  |  || ||  |  | |   | | ||  || | ||  | ||       
CTGCTGAGTTGTATGATTTTGATGATGAGAAGgtaagttgacgtattatct-ttgctaactatggactat-gtttttattgctcaattttg-catcaacccccctgccctgcctcttgtgtttttaaccaacctctgtatgtgttttttttctttaaatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28967912|gb|CB346945.1|CB346945
EST:     CTGCTGAGTTGTATGATTTTGATGATGAAAAG                         GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAG
genomic: CTGCTGAGTTGTATGATTTTGATGATGAAAAGgtagaagcat ... gttgatgtagGATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAG