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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagcatcttgcaagttgattgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagcttattggaaattcatttcatttcag

Basic information

species Vitis vinifera
transcript Vv05s0020g01740.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA15G10310.2 (Glycine max), 5'ss of exon 8
AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagcatcttgcaagttgattgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagcttattggaaattcatttcatttcag
|||||| || |||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||| | ||  | ||| ||  ||||| |||||     ||||| |     | |||     || |     ||| ||||     ||                    
AGAAGAAGCTAACAACCTATCCAACATGGTCCATGCTGACAATGTAAGGCTTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTCAAAAGgtatataa-acctttcat-ttgatggaagt-----acttgcatacctttataaagactgcattgacttaagtaaaaacttttag-----------------

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 17
AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagcatcttgcaagttgattgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagc-ttattggaaattcatttcatttcag
|||||| || |||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||| | ||  | ||| ||  ||||| |||||     ||||| |     | |||     || |     ||| ||||    | || | |                
AGAAGAAGCTAACAACCTATCCAACATGGTCCATGCTGACAATGTAAGGCTTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTCAAAAGgtatataa-acctttcat-ttgatggaagt-----acttgcatacctttataaagactgcattgacttaagtaaaaacttttagtag---------------

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 14
AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagcatcttgcaagttgattgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagcttattggaaattcatttcatttcag
|||||| || |||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| | ||  | ||| ||  ||||| |||||   ||  |     || |||| | |||   |   | ||  |  || ||| | | |                 
AGAAGAAGCTAACAACCTATCCAACATGGTCCATGCTGACAATGTAAGGCTTGAGCATGATGTGGCATTCCTCAAGGCTGTTTTAGATGATACTCAAAAGgtatataa-acctttcat-ttgatggaagtacttgcataccttttcataaaagctgc--attgacttagtaaaaacttttagtag----------------

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G02680.1 (Glycine max), 5'ss of exon 13
AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagcatcttgcaagttgat-tgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagcttattggaaattcatttcatttcag
 ||||||||||||||||| || ||||| || ||||||||||||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| || |||||      ||| |    | |||||  |||| |  ||  |     | || | | | |        ||||||||   | ||  |  |||||  ||  |      
GGAAGAGGCCAACAACCTATCAAACATTGTGCACTCTGACAATGTACGGCTTGAGCATGATGTGGCCTTCCTCAAGGCTGTTTTAGATGATACACAGAAGgt-----acatgtacatatttgatgcgaagctcctgcatacctgtatacattgtatacatggttattttatgattgatttatttaaatttgttgtag-----

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA07G38020.1 (Glycine max), 5'ss of exon 14
AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgta-gcatcttgc-aagttgattgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagcttattggaaattcatttcatttcag-----------------------------------------------------------
 |||||| |||||||||| || ||||| || || |||||||||||| |||| || |||||||| || ||||| ||||| |||||||||||||| ||||||||   ||   || |||  ||| |     | | | | || ||   |   ||   ||  | |      || | | | |  |  |   |||  |||      ||                                                             
GGAAGAGACCAACAACCTATCAAACATTGTGCATTCTGACAATGTACGGCTAGAGCATGATGTTGCCTTCCTCAAGGCTGTTTTAGATGATACACAAAAGgtacatacatattttgttaagatatgatatgatagagatttacgagagatttgataagatatgattttgtttatgatatggtatcaaagccatgcatcctccatgaagatctgcataatgtgtacattttatgagatattgatttatttaaatttggtaaag

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ23817 (Selaginella moellendorffii), 5'ss of exon 13
AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagcatcttgcaagttgattgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagcttattggaaattcatttcatttcag
||||||| |||||| ||| |||||||| ||||||||||| ||| ||||||| ||||| ||  |  | || || ||||||||  | || || || ||||||||   |  ||  ||||    |   |||  ||  |   || | ||  |   | |                                                
AGAAGAGTCCAACAGCCTTTCCAACATCGTCCACTCTGAGAATTTAAGGCTGGAACACGACCTCTCGTTTCTAAAGGCGGTGCTCGAGGAGACTCAAAAGgtaactttca--ttgcggcatagctgagctttctc-tttatgatc-acgttgtag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188410|gb|CF607759.1|CF607759
EST:     TTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAG                         GAGCTTCATTCAACTAGAGGAGTGCTTGCAGGAGAGAGGGCAAGAGCATTC
genomic: TTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagca ... ttcatttcagGAGCTTCATTCAACTAGAGGAGTGCTTGCAGGAGAGAGGGCAAGAGCATTC
EST: gi|110389348|gb|EC954177.1|EC954177
EST:     TTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAG                         GAGCTTCATTCAACTAGAGGAGTGCTTGCAGGAGAGAGGGCAAGAGCATTC
genomic: TTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagca ... ttcatttcagGAGCTTCATTCAACTAGAGGAGTGCTTGCAGGAGAGAGGGCAAGAGCATTC
EST: gi|110698486|gb|EE076040.1|EE076040
EST:     TTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAG                         GAGCTTCATTCAACTANAGGAGTGCTTGCANGAGAGAGGGCAAGAGCATTC
genomic: TTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagca ... ttcatttcagGAGCTTCATTCAACTAGAGGAGTGCTTGCAGGAGAGAGGGCAAGAGCATTC