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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgcttttccttcattatgccttctttttttcttatgtaggagtaactaaacttcataaactaagggttctacctttatatgatccttacaatatcttccaattgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00880.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 15
GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgcttttccttcattatgccttctttttttcttatgtaggagtaactaaacttcataaactaagggttctacctttatatgatccttacaatatcttccaattgcag
|||||| ||||| || ||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||    ||  ||||| |     | | | || | |   | ||      |||   | | | |     ||   |  || | ||  || ||                 
GTGGGGTTTTCTATCTCGTGCTGGACTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtgcttactttt--ttatgaccctgatctctattttatcacattact----cttttgatattgaa----ctgtttaaattttattattgcag----------------

upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 15
GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgcttt--tccttcattat-gccttctttttttcttatgtaggagtaactaaacttcataaactaagggttctacctttatatgatccttacaatatcttccaattgcag
|||||| ||||| || ||||| || || ||||||||||| |||||||||||||||||||| ||||||||| |||  |  ||  |||| |    |  |  |   ||| |      |  ||  |||   | ||| |    | ||  |||||       || ||                 
GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtggtttagtggttacttattgatgaccctgatctctattttatcaca-ttactcttttgatactgaactgtttaaatttat-----tattgcag----------------

upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA15G21240.1 (Glycine max), 5'ss of exon 14
GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgcttttccttcattatgccttctttttttcttatgtaggagtaactaaacttcataaactaagggttctacctttatatgatccttacaatatcttccaattgcag
|||||||| ||| || ||||| ||| | ||||||||||| ||||||||| |||||||||| ||||||||  | || ||||   |  ||     | | | ||||    || |    |   |    ||| | |    | ||  ||||| | |    ||                   
GTGGGGCTATCTATCGCGTGCTGGTTTGTGGGATAAAAGCCACTTGATGCGACAAATTGAGAAgtatgt--tatttcttctagacacccctgatctctattataccagactttgcactttcttgaaaatgaactgtttaaatttatttcaattgtag------------------

upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 15
GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgcttttccttcattatgccttctttttttcttatgtaggagtaactaaacttcataaactaagggttctacctttatatgatccttacaatatcttccaattgcag
||||||||| || ||||| |||||| | ||||||||||| ||||||||||||||||| ||||||||| |     || |    | ||| ||      |   |   || |   ||   ||  ||| |    ||     ||||  |||  |  || | | |||   || ||       
GTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgcctcttc---tctgcatttccgagtaact-cataagctcaaaccaagctcacatttaaa-----ctacacttactt--tcttcaaaattggtttcag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352773983|gb|FQ473115.1|FQ473115
EST:     TCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA                         GTATGCTGATATTTACACCTCTAGGGTCTCAAATTTCCTACATTATACACC
genomic: TCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgctt ... ccaattgcagGTATGCTGATATTTACACCTCTAGGGTCTCAAATTTCCTACATTATACACC
EST: gi|352772409|gb|FQ469934.1|FQ469934
EST:     TCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA                         GTATGCTGATATTTACACCTCTAGGGTCTCAAATTTCCTACATTATACACC
genomic: TCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgctt ... ccaattgcagGTATGCTGATATTTACACCTCTAGGGTCTCAAATTTCCTACATTATACACC