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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAGATGGGGAGTCCATGGGATTACACTTCCTGGAAGGGTTACGTTTGCACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAGgtaagcagaaaagtactcatcttagtctttgccatttgactataatttattatgacagctgatgctggtttcttccatttttatatgcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01180.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01180.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G39180.1 (Glycine max), 5'ss of exon 15
TGGAAGATGGGGAGTCCATGGGATTACACTTCCTGGAAGGGTTACGTTTGCACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAGgtaagcagaaaagtactcatcttagtctttgccatttgactataatttattatgacagctgatgctggtttcttccatttttatatgcag--------
|||| |||||||| |||||||||| |  ||||| ||||||||||| |||||||| || ||||| || ||| | ||||||||||| || || ||||  ||||||      |||      | |||  | | |     ||| | ||||||| | || ||| |||||  ||   |||| |||||||   ||           
TGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCACCAGGCAATGTTGGATTTGCGACCTTTGGTGCACCTCGCCCTACAGAGgtatatgtcaaa------accttgttttatataggttg-ccataatttgtcat-acaactgat-ttgtgctctttcatttttccttgttttactgcag

upper sequence: Vv04s0044g01180.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA06G15760.1 (Glycine max), 5'ss of exon 15
TGGAAGATGGGGAGTCCATGGGATTACACTTCCTGGAAGGGTTACGTTTGCACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAGgtaagcagaaaagtactcatcttagtctttgccatttgactataatttattatgacagctgatgctggt-ttcttccatttttatatgcag--------
|||| |||||||| |||||||||| |  ||||| ||||||||||| ||||| || || ||||| || ||| | ||||||||||| || || ||||  ||||||      |||      | |||  | | ||     || | ||||||| | || ||| |||||  ||||  |||| |||||||   ||           
TGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCGCCAGGCAATGTTGGATTTGCGACCTTTGGTGCTCCTCGCCCTACAGAGgtatatgtcaaa------accttgttttatgtaggctg-ccataatttgtcat-acaactgat--tggtgctctttcatttttccttgttttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389298|gb|EC954124.1|EC954124
EST:     CACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAG                         ACTCAAATCATCAGTGATGAAACTTGGAAACTAATCGATGGTATCTGGGAT
genomic: CACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAGgtaagcagaa ... ttatatgcagACTCAAATCATCAGTGATGAAACTTGGAAACTAATCGATGGTATCTGGGAT
EST: gi|110381674|gb|EC935090.1|EC935090
EST:     CACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAG                         ACTCAAATCATCAGTGATGAAACTTGGAAACTAATCGATGGTATCTGGGAT
genomic: CACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAGgtaagcagaa ... ttatatgcagACTCAAATCATCAGTGATGAAACTTGGAAACTAATCGATGGTATCTGGGAT