Sequence
atgc intronic sequence ATGC exonic sequenceGTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTGgtaagctcctcaatcttattactttaactgagttgaacttctctttgaaatatggttgcaaatgagtcctttccaatgttttgaagattggactagattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02560.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G05950.1 (Glycine max), 5'ss of exon 13
GTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTGgtaagctcctcaatcttatt------------actttaactgagttgaacttctctttg-aaatatggttgcaaatgagtcctttccaatgttttgaagattggactag-attg------------------------------------------------------------------------
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GTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTGAGGGTTATGAGCCAATTGAATTTGTGCTTACAAAAACATGTGgtgagtgatactaactcacctagaagatttagaatctactattattcctcttctttttatgtatttagttaataggaagactgaacaagtatggtgattatgccaatggtattataatgttctttttttcttttaactaccatttctgttgaatgaaggcctcgctctgtttatttattgttgcag
upper sequence: Vv04s0023g02560.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA16G24650.1 (Glycine max), 5'ss of exon 6
GTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTGgtaagctcctcaatcttattactttaactgagttgaacttctctttgaaatatggttgcaaatgagtcctttccaatgttttgaagattggactagattg----------------------------------------------------------------------------------------
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GTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCAGTTGAGGGGTATGAGCCAATTGAATTTGTGCTTACAAAGATATGTGgtgaatgataccaactcacctagaaaattcagatt--ctactattattcctcttgttctttatatgtattta--attaataggaagactgaacaagtatggtgattatgccaatggtattataacatttttcttttaactaccatttctgttgaatgaatgcctagctctgtttatttattgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33406646|gb|CF212273.1|CF212273EST: TCCAGTAGAAGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTG AATATCCTCAAGGAAAAGGAGGAGGAACTACAAGGGGATGGGCTATATTTG
genomic: TCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTGgtaagctcct ... aattttgcagAATATCCTCAAGGAAAAGGAGGAGGAACTACAAGGGGATGGGCTATATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTGgtaagctcctcaatcttattactttaactgagttgaacttctctttgaaatatggttgcaaatgagtcctttccaatgttttgaagattggactagattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttcc