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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttattttatattaatgatatccttttttgttttcttgtgcgcaatgtatctggttttttttttttccttgtagcaggttccttttattttttat...

Basic information

species Vitis vinifera
transcript Vv04s0023g01300.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G169095_T01 (Zea mays), 5'ss of exon 15
CTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttattttatattaatgatatccttttttgttttcttgtgcgcaatgtatctggttttttt---tttttccttgtagcaggttccttttattttttat-
|||||| ||||||||||||||||| ||  |   ||| || ||  || | || || |||||||| ||||| ||||| |||||||||||||| ||||||||||||||      || | || ||  |    | || |   |   | |  | |  || ||||  | | ||   | |   ||  |      |    ||  | | | || 
CTTTGGTATAAGATTGGAGAATGTACTTATTTGCAAAGACGCCAATGCTAAGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcactaattgt-ttgat--tgctttcttctacatgagtata-gaagagtgtctgactatattcagtgtgcactcatgctcaatattattgttatatgatc

upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA01G38410.3 (Glycine max), 5'ss of exon 14
CTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttattttatattaatgatatccttttttgttttcttgtgcgcaatgtatctggttttttttttttccttgtagcaggttccttttattt--tttat
 ||||| ||||||||||||||||| ||  |  ||||||||||||||||||  ||||||||||||||||  ||||||||  | ||||||||||| || ||||||||||  |  ||| || || || |  ||| |  ||   || |   ||  | ||     ||||    | |      |||   | |  || | |   || ||
GTTTGGGATAAGATTGGAGAATGTGCTTATTGTCAAGGAGGCTGATACAACTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttc-tagtatgtttattat-tagtttgtctttaatttatttccatgggatgcttattttgaaatatgtaaaaagcttctgcacttcactcaattaat

upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA11G06900.1 (Glycine max), 5'ss of exon 15
CTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttattttatattaatga---tatccttttttgttttcttgtgcgcaatgtatctggttttttttttttccttgtagcaggttccttttattttttat
 ||||| ||||||||||||||||| ||  |  |||| ||||||| |||||| ||||||||||||||||  ||||||||  | ||||||||||| || ||||||||||  |  ||| || || |   | || |  ||| ||| | || |     | | |    | | |         ||| |      ||  || |||      
GTTTGGGATAAGATTGGAGAATGTGCTTATTGTCAAAGAGGCTGGTACAAATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttc-taatatgtttattagtttgtcttagtttatttccatgggatgtttattttgaatatgtaaaaagcttttgcacttcactcaattaattcaac--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110429925|gb|EC996439.1|EC996439
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|27582875|gb|CB005570.1|CB005570
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|30302963|gb|CB979757.1|CB979757
EST:     GGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: GGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|33401954|gb|CF207581.1|CF207581
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGGCCAGAGCCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|29782363|gb|CB347609.2|CB347609
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|110700420|gb|EE078440.1|EE078440
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|30299030|gb|CB975824.1|CB975824
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|32246039|gb|CD711858.1|CD711858
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|110379199|gb|EC944379.1|EC944379
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
EST: gi|29782317|gb|CB347526.2|CB347526
EST:     AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGG                         GCACCATACCNNNNNNNGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG
genomic: AATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttat ... gtgtgcccagGCACCATACCAAAAAAAGTTGATTGACCAGAGTCTTTTAACGCCTGAAGAG