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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATAAAAGCATGGTTGTATGACAATTTGGGAGCGAGAGTTGATTTTGATGCTCCAGGTCATTGGTGCACAACAATGGCATACAGTGATGATAATAAAAGgttgatttactgggtgttcactgccattctgatggttttaccttctatttgcttttatggagaaattgaaacatcgttgttttcatggaacaccttgttag

Basic information

species Vitis vinifera
transcript Vv04s0008g06330.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g06330.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 14
AGATAAAAGCATGGTTGTATGACAATTTGGGAGCGAGAGTTGATTTTGATGCTCCAGGTCATTGGTGCACAACAATGGCATACAGTGATGATAATAAAAGgttgatttactgggtgttcactgccattctgatggttttaccttctatttgcttttatggagaaattgaaacatc----gttgttttcatggaacaccttgttag
|||||||||| ||| | |||||   | | ||  | |||||||| | |||||| ||||| ||||||||||| |||||||| ||||||| ||||   |  ||||  || ||  |    || | |  | || |    || | |   | | |||| ||| ||  |  || ||   ||||     | | | |    |    || | |   
AGATAAAAGCCTGGCTCTATGATCTTCTTGGTTCTAGAGTTGACTATGATGCACCAGGGCATTGGTGCACTACAATGGCTTACAGTGCTGATGGCACTAGgt--atgta--gaaccttgattcgccttttatacgtgtcaaagt-tgtttggtttaattcactaaatgctccatctaaaatggatgtttgtggttgccatctgga

upper sequence: Vv04s0008g06330.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ17248 (Selaginella moellendorffii), 5'ss of exon 14
AGATAAAAGCATGGTTGTATGACAATTTGGGAGCGAGAGTTGATTTTGATGCTCCAGGTCATTGGTGCACAACAATGGCATACAGTGATGATAATAAAAGgttgatttactgggtgttcactgccattctgatggttttaccttctatttgcttttatggagaaattgaaacatcgttgttttcatggaacaccttgttag
| || ||||| ||| | || || ||| | ||  |  |||| |||| ||||||||| ||||  ||||||||||||||||| |||||||  |||   | ||||||   ||      |    | | ||||         |||   ||| |                                                      
AAATCAAAGCTTGGCTTTACGATAATCTCGGTTCTCGAGTAGATTATGATGCTCCTGGTCGCTGGTGCACAACAATGGCTTACAGTGCGGATGGAACAAGgtttgcttcaacctttggtatttccatcacatc--ctttgttttccag-----------------------------------------------------

upper sequence: Vv04s0008g06330.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ30926 (Selaginella moellendorffii), 5'ss of exon 14
AGATAAAAGCATGGTTGTATGACAATTTGGGAGCGAGAGTTGATTTTGATGCTCCAGGTCATTGGTGCACAACAATGGCATACAGTGATGATAATAAAAGgttgatttactgggtgttcactgccattctgatggttttaccttctatttgcttttatggagaaattgaaacatcgttgttttcatggaacaccttgttag
| || ||||| ||| | || || ||| | ||  |  |||| |||| ||||||||| ||||  ||||||||||||||||| |||||||  |||   | ||||||   ||          |  ||  |||   |     | || | ||  ||| ||||   |                                         
AAATCAAAGCTTGGCTTTACGATAATCTCGGTTCTCGAGTAGATTATGATGCTCCTGGTCGCTGGTGCACAACAATGGCTTACAGTGCGGATGGAACAAGgtttgctt------caacctttggtatttcca-----tcacatcct--ttgtttttccag-----------------------------------------