Sequence
atgc intronic sequence ATGC exonic sequenceACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttgtagttctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttctgtct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G07460.1 (Glycine max), 5'ss of exon 14
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttgtagtt-ctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttc-tgtct
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GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgtaagttgatttatttactgttttactttaattgtatacaaatttcaggaaactgttttgtatattttaacgggtttgatgtaact-tgaccatacacatc-
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA06G07580.1 (Glycine max), 5'ss of exon 14
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttg---tagttctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttctgtct-
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GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgttagttgatttatttactgttttactttaattgtatacaactttcaagaattttt----tttgtatatttcgatgggtttgacgtaacttgaccatacatatc
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 14
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttgtagttctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttctgtct--
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GCATGCATATTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGAAAATgtgagttcatttcatttgctttactcccaacagtgtactg-cttgggattttttccccaatagatttaaaatctataatttg-taatagctgggttatgcag
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G30910.1 (Glycine max), 5'ss of exon 14
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggacta-gttcttctttttgtagttctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttctgtct-
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GCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCACATGACAAAACTGTCAGAGTTTGGGATGTTGAAAATgttagctcatttcatttgttttactccaatagtgtactgcttttgagattttttccc-ctatagatttaatatctatattttg-taataactaggctatgcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37189135|gb|CF608484.1|CF608484EST: TTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGT ACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCG
genomic: TTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggac ... tattctgcagACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttgtagttctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaata