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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttttctttaggtgtattatatgttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag

Basic information

species Vitis vinifera
transcript Vv04s0008g02580.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 14
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttttctttaggtgt--attatatgttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag
|| |||||||| || || ||||||||||| |||||||| ||||||||||| || || ||||| || ||||| || || || || |  ||  |||||      |||       | ||  | || || |  | | || |    | | || ||| |      ||     || |  ||  |    |    ||| |                   
GTCTTCTGGGGATTAGATAAAAAGCTTGCCCAGAGGAAGCATTTCCCATCAGTGAATTGGCTCATATCTTATTCGAAATATTCTAAGgtttgttctgacaagcaacttgcttaaatagt-ttattctcccctcagattccaactgtaagttgatttagacttg---tgcacaaagattaagaaagtactaa-------------------

upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 14
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttttctttaggtgtattatatgttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag
|| || ||||| ||||| || ||||| ||||| || || |||||||||||||| || ||||| || |||||||| || |||||||  || | | ||    | |  |        || | |||    |  |  |       | | ||  ||   |||    ||  | |                                         
GTCTTTTGGGGATTGGATAAGAAGCTGGCTCAAAGAAAGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattcctaacttccctatgatgtcaatacaattaaaatcgccattttacactaacatactatatcctgt--actgtag-----------------------------------------

upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 14
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttt-tctttaggtgtattatatgttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag
|| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || || ||||| |  || | ||| |   ||     | ||| | |   |   || || ||| |||  || | ||     ||    |    |  |   |   |  | | ||| |   | |                   
GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcctgaattgtgtaaaacctgtttgcacatttattatctctagaagtttcatgc---aaaatatggagaataataaaggaaatataaaggttgttga-------------------

upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 14
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttctt---ctgttcaaacacaccagatgctattgttttttctttaggtgtattatatgttaacgccttctcaccatggattaat-ttcttaagctcacttattgctttgtacattttcag
|| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || || ||||| |  || | ||| |   ||||  ||| ||      ||||    ||| || | |       ||  |||  ||        ||| |   |  ||  || || |                            
GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcctgacctgtgtaaa-acctgttttgctcgcatttattatctcaaaa-gtttcatgcaaaatatggaccacaagaaaagaaggttgttgataatg-----------------------

upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 15
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttttctttaggtgtattatatgt-taacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag
|| ||||||||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||| || || |||||||| ||| || ||   |||     ||     |    ||   |    ||||     | || ||||  ||  |  ||    |||||  ||            | |  | ||  |||    || || ||
GTTTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGgtatgtcctaaagtt-ggttactttgtaactcatc-ctccagctttctacat-ttgtatgcatagtgttttggttccatgactttccccgaatttttaatattttctttttggtatctttag

upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 15
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgtt---ttttctttaggtgtat-tatat-gttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag
|| |||||||| ||||||||||||||||| |||||||| || || || ||||||||||||||||||||||| || || |||||||| ||| || ||   |||            |  | ||| |     |||||  |  |||||  |||| ||||  |  ||    |||||  ||   |  ||    | |  | ||  |||    || || ||
GTTTTCTGGGGGTTGGACAAAAAGCTTGCCCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGgtatgtcctcaagttggttactttgtaaccccattctccagctttctacatttgtatgcatatagttagtgttttggttccatgactttcctgatttttttaatattttctttttggtatctttag

upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 15
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttttctttaggtgtattatatgttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag
|| |||||||||||||||||||||||||| ||||| |||||||| || ||||| || ||| | ||||||||||| ||||| ||||| ||| | |    | |||         |  ||   | ||||  | | |||   | || ||| | ||   || ||     |   |||                                     
GTCTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaaatattctcggttcaaacttgtcttggtttactatctagaaatcttgtatataaaacgctgctttttgtt--ttag------------------------------------