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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCTgtaagcattaaatcccattactttcttaaaaatcttcagcaacttgatggtgatcattgacccattgaattgatggcag

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 16
AAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCTgtaagcattaaatc-----ccattactttcttaaaaatcttc-------agcaacttgatggtgatc-attgacccattgaattgatggcag
||||||||| |||||| ||||||| ||||| || |||  ||||||||| ||||||| ||| ||||||||||||||||||  ||| |     | |||||| | ||| |  | ||        |   || | | |||||   |||   | ||    ||        
AAATGTTGCAAACAACAATCTTGAGGGGCCAATTCCTAGTAATCTTAGCTCATGTAAAAATCTCAACAGCCTgtaagcaacaaaacttgtactattactgtgttacatttttttttgtcatatatacattaaggtgacagatttttctatccttttag------

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA14G11220.1 (Glycine max), 5'ss of exon 15
AAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCTgtaagcattaaatc-----ccattactttcttaaaa--atcttcagca--acttgatggtgatcattgacccattgaattgatggcag
|||||||||||||||| ||||  | ||||| || |||  ||||||||| ||||||| ||| |||||||||||||||||   ||| |     | ||||||||  || ||   | ||  | |  || | | |||||   ||    |  |   || |      
AAATGTTGCTAACAACAATCTCAAGGGGCCAATTCCTAGTAATCTTAGCTCATGTAAAAATCTCAACAGCCTgtaagccacaaaacttgtactattactttgctacaattgttttttgtaatacattaaggtgacagttttttctatccttttag-----

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA06G05900.1 (Glycine max), 5'ss of exon 16
AAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCTgtaagcattaaatccc----attactttctta---aaaatcttcagcaacttgatggtgatcattgacccattgaattgatggcag
|||||| || |||||| | ||||| || ||  | |||||||||||||| |  |||| |||||||||||||||||||||| |||  | |    || | ||| | |     ||| ||     |  | | | ||||   |   |||         |  |||
AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaataagcctcgtatatcaatttgtaataaggaattttatattatgttaagctgatggattttccaactgtcatgtatcag