Sequence
atgc intronic sequence ATGC exonic sequenceACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtttctgttattatgcagtgtaattattacatttctgtctttagatatatctctagatcccaatgattgtttgatttaccatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 15
ACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtttctgttattatgcagtgtaattattacatttctgtctttagatatat-----------ctctagatcccaatgattgtttgatttaccatcag------------------------
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ACAATTTGATAAGATTCTCATGGGATTGCTAAGAAGGATATTGGATACTAACAAAAGAGTGCAAGAGGCTGCTTGTTCAGCGTTTGCAACTCTTGAAGAGgttaatgacat-atatagtatgctttgttttttccccctgggaattgcataagaattagtattatgcatgcaagtaagtttgcagattctaatctgtacatattggttttctattttcag
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 15
ACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtttctgtta------ttatgcagt-gtaattattacatt---tctgtctttagatatatctctagatcccaatgatt----gtttgatttaccatcag----------
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ACAGTTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttctgactacaatttttgttcatttacccttaatgaattgattcaattacttgatttattttaaatttatataaatctgaaatttggtttactaaacttttatgatag
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 15
ACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtt------------tctgttattatgc----agtgtaattattacatttctgtctttag---atatatctctagatcccaatgattgtttgatttaccatcag-----
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ACAATTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTCCAAGAGGCTGCTTGTTCAGCCTTTGCAACTCTGGAAGAGgttctgactacaatttttgttcatttacccttagtgaattgattcaattactcgatttattttaaatttatataaatctcaattttggtttactaaacttttattatag
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 15
ACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtttctgtta-ttatgcagtgtaattatta----catttctgtctttagatatatc-tctagatcc-caatgattgtttgatttaccatcag
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ACAATTTGAGAAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCTGCCTGTTCAGCTTTTGCAACTGTTGAAGAGgtacctgttggctttgcaatgtggtttttggtggcatttgtcaatgttggttgaccatgtaaatcttctatgaacgtgtag-----------
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: PP1S41_175V6.1 (Physcomitrella patens), 5'ss of exon 14
ACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtttctgttattatgcagtgtaattattacatttctgtcttt-----agatatatctctagatc-ccaatgattgtttgatttaccatcag----------
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GCAATTTGATGCTGTACTTACAGGGTTGCTTAAACGCATTCTGGATAGCAATAAGCGTGTGCAGGAAGCTGCGTGTTCCGCATTTGCCACTCTCGAAGAGgtaattat-gtactactgttgaacacctgcatcttagcccttccgcaggtcgtccctcttgtttattaatggtcccttgcatccaaattgttcgaatgttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34550426|gb|CF518644.1|CF518644EST: GTTCAGCTTTTGCC-GACTCGAAGAG GAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTA
genomic: GTTCAGCTTTTGCCACACTCGAAGAGgtttctgtta ... ttaccatcagGAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtttctgttattatgcagtgtaattattacatttctgtctttagatatatctctagatcccaatgattgtttgatttaccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA