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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattactgattaattcactatggaatctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttttttttttggtg...

Basic information

species Vitis vinifera
transcript Vv02s0033g01360.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G34830.1 (Glycine max), 5'ss of exon 15
GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattactgattaattcactatggaat-ctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttttttttttggtg
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GGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCTATATCTACAGGATTTCGTAAGgtgagaagtaaaaaatattggcttttgcccatatgtgatatactgctcttatctaagatacttctctactagagggcatgaatgtttgtcctattcaaca-

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 15
GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattactgattaattcactatggaat-ctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttttttttttggtg
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GGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTTGCTGCTTCTGAAAATGATGGTGCTATATCTACTGGATTTCGTAAGgtgagaagtaaaaaatgttggcttttgcccatatgtgagatactgctcttat-ttaagatacttctctactagagaacatggatgtttgtcctattcaaca

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattac-tgattaattcac---tatggaatctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttt---tttttttggtg-------------------
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GGCTGAAGAAATGCAAGCGGCGACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATTTCTTTGGGCTTCAGAAAGgtgagatacatgtgaaaatatgttcttagtttcctcatatgggcatcttgattaatctaaattggcaaatgataagaactacaaaatcttcgtagctgtttcaagtgagatcgtttatgttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010858|gb|BQ795892.1|BQ795892
EST:     AACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGTTTCCAAAAG                         GTCTTGAAGAATTTCCTTGACACTGCTGAAGCTGAAGTAAGGTCGCTTATC
genomic: AACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggta ... tcaatctcagGTCTTGAAGAATTTCCTTGACACTGCTGAAGCTGAAGTAAGGTCGCTTATC