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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattactgattaattcactatggaatctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttttttttttggtg...

Basic information

species Vitis vinifera
transcript Vv02s0033g01360.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G34830.1 (Glycine max), 5'ss of exon 15
GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattactgattaattcactatggaat-ctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttttttttttggtg
||| || |||||||||||||||||||||||| | || || ||||||||||||||| |||| || |  |||||||||||||| ||| | || || |  ||||||||  ||| | |  |||     ||       | ||  || ||||||| || |    |       || |    |  || |   ||| |  | ||      
GGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCTATATCTACAGGATTTCGTAAGgtgagaagtaaaaaatattggcttttgcccatatgtgatatactgctcttatctaagatacttctctactagagggcatgaatgtttgtcctattcaaca-

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 15
GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattactgattaattcactatggaat-ctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttttttttttggtg
||| || |||||||||||||||||||||||| | || || ||||||||||||||  |||| || |  |||||||||||||| ||| |||| || |  ||||||||  ||| | |   ||     ||       | ||  || ||||||| || ||    |    ||    | | | |        ||| |  | ||     
GGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTTGCTGCTTCTGAAAATGATGGTGCTATATCTACTGGATTTCGTAAGgtgagaagtaaaaaatgttggcttttgcccatatgtgagatactgctcttat-ttaagatacttctctactagagaacatggatgtttgtcctattcaaca

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattac-tgattaattcac---tatggaatctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttt---tttttttggtg-------------------
||| || ||||||||||| | || |||||| |||||||||||||||||||||||||  || || |  ||||||||||| || |||   ||||||  |||||||||    |  |   | ||  |  ||| ||  |   |||||         | |   |   || | |  |  |  |    |  |    ||  |   | |||   |||                   
GGCTGAAGAAATGCAAGCGGCGACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATTTCTTTGGGCTTCAGAAAGgtgagatacatgtgaaaatatgttcttagtttcctcatatgggcatcttgattaatctaaattggcaaatgataagaactacaaaatcttcgtagctgtttcaagtgagatcgtttatgttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010858|gb|BQ795892.1|BQ795892
EST:     AACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGTTTCCAAAAG                         GTCTTGAAGAATTTCCTTGACACTGCTGAAGCTGAAGTAAGGTCGCTTATC
genomic: AACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggta ... tcaatctcagGTCTTGAAGAATTTCCTTGACACTGCTGAAGCTGAAGTAAGGTCGCTTATC