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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag

Basic information

species Vitis vinifera
transcript Vv02s0025g03480.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccac-tttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag-------------------------------------------------------------
 || |  |||| ||||||  | |||||||| || |||||||||| |||||| ||||| ||||| |||||||||||||| || |||||||| || || ||||||   ||        || ||| |       |  ||  |    |  ||| ||||  |  ||   | || |  || |  |  | |||                                                             
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaactta-tattgatcttttttattggta-ttgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatg-tacccactttat-----ttttcatccaaaaaatatgttaaagagattactatttgtact--tcacactgttcc--ttttgtttctccag---------
|||    || | ||||||| ||||| |||| || |||||||| || ||||| ||||| ||||| |||||||||||||| || || ||||| || || |||||||| | | | |   ||     | || ||| ||   || |  |  |||  | ||||||   | |  | |   | || |  |    ||| | ||          
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatgatgctctcagcataagaatattgatctaatttatgtcattgagaagt-actattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatg----------------------------tacccactttatttttcat-ccaaaaaatatgt-taaagagattactatttgtacttcacactgttccttttgtttctccag
 ||    ||||  || ||| ||||| |||| || |||||||| ||||||||||| || || || ||||| |||||||| || |||||||| || ||||||||| |                            |    | || | ||| | | ||| || || | | || ||  | || | | | |||  |   ||||| || |   ||   |||
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcacta-tgtgtttacaacgatctgtttctatcaatttctcag

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
ATTTTTA-GACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactt---------tatttttc-----atccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag
 |||  | || | ||  ||| ||||| |||| || |||||||| |||||||| || || ||||| |||||||||||||| || ||||||||  |||| |||||||| | | |            |||||||      ||    | | |   |||    |     ||| | |||   |   |||| |  |   ||   |||
-TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagctatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag
|||    |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| |     |   |||             ||||||    |  |  |    | |||||  ||       || |  |       
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttt----tatgttgcgtatctagcctaatttacttagcaactgcttttctactag-----

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag
|||    |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| |||||||| |     ||  |||             ||||||    |  ||      | |||||  || |     || |  |       
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcgtttaatgcttttt---tatgttgcgtatcttgtctaatttacttagcaattgcttttctactag-----

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttcct--tttgtttctccag
 || ||||| |||| |||||||||||||||  | |||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||  |  | |  ||  ||||  |  |  | ||   ||||  | || | |||  ||  |||  || ||| ||  ||||      |||
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgatttt-gttaacgatatgctttaacca-atgattataagtttttctaacagtttctattttgcaaacacag

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaa---atatgt-taaagagattactatttgtacttcacactgttcc-----ttttgtttctccag------
 || ||||| |||| |||  | ||||||||  | |||||||| |||||||| ||||||||||| ||||| || || || |||||||| || ||||| |||||| | | |   | || ||||  ||   | |    ||||  | | |||  | | |||| |  ||  ||            | | |  | || |       
TTTCTTAGATACTCGACCTATGATTCGATCCATTCTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTATACGATGgtaagaaacatgtctagttttgttctttatatatttatgcatcatgagtctccaatttctctttgccaaaaaaaaaagagtctcgaatttctaaccattt

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag
|||  | || ||||| ||||| || || || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| || || ||||||| ||      | |  | | || ||| ||   | ||   |  | || |   |||||                           
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtattta------tgacatattatacaacaacattatt--tgcaactatttgctgtacag-------------------------

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag
|||  | || ||||| ||||| || || || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| || || ||||||| ||   || | ||| | || |  || | ||| |  ||    || || |                                 
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatg-acataattatacaac--aacattatttgcaactatttgctgtacag-----------------------------

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag
 ||| | ||  | || || || |||||||| || |||||||| | ||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||| |      || |    | | |  |  |  | |||   |  |  || |  | | |                            
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaag------ctgtgagctccgtt-aggatttgtgtattaacgtctattgat-gcag---------------------------

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag
 ||| | ||  | || || || |||||||| || |||||||| | ||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||| |       | |    | | |  || |  | |||   |  |  || |  | | |                            
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagg------tgtgagctccgtt-aagatttgtgtattaacgtctattgat-gcag---------------------------