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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgtaagttgtcaaagttcaactgctacatggtttccctttgcttcattggctgctttcttctgtgagtcatgctggcatcacagtttcttcttgttcatca...

Basic information

species Vitis vinifera
transcript Vv01s0150g00030.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 15
TGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgtaagttgtcaaagttcaactgctacatggtttccctttgcttcattggctgctttcttctgtgagtcatgctggcatcacagtttcttcttgt-tcatca-----
||| ||| | || || |||||||||||| |||| |||||  ||||| | ||||| ||||| ||||| || ||  | ||||| ||||| |||||||| ||||||||      |||  | | |   |     ||| |   |||   |  |     |      |    |   || |||    | | |    | || | | |        
TGGTGCAGCAGAGCCTGACTGGGCATCCCTAAACCTTGGAATTCTTCTATGCATCGAATGCTCTGGGGTACACAGAAATCTCGGTGTGCATATATCTAAGgtaagc-----aagcgctattctcat-caattttcacatgcaaaaaagttcattgcacaatcgaggcattgttggttctatattcagattttatgttagggtttaa

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 15
TGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgtaagttgtcaaagttcaactgctacatggtttccctttgcttcattggctgctttcttctgtgagtcatgctggcatcacagtttcttc--ttgttcatca-----
||| ||    ||||| || |||||||| ||||| ||||| |  ||| | ||||| || |||||||| || || || |||||||| || ||||||||||||||||      ||| || ||||| ||      |||  |||  |  ||  |||  |||||  ||   |||||||    |      ||||| |  |  || ||       
TGGTGCTTTGGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACCGAAATCTTGGAGTGCATATATCAAAGgtaaccacgaaaattttaactgttaa-----ttctttttaatagat--gctagtttctcttgatggtcatgcacatagattgatttctgcattcatttattctttga

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 15
-TGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgtaagttgtcaaagttcaactgctacatggtttccctttgcttcattggctgctttcttctgtgagtcatgctggcatcaca-gtttcttcttgttcatca
 ||| || |||||||| || ||||||||  ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| || ||||||||||||     |  |||  ||    ||  ||   ||   | || |  ||  ||   ||  || | |   |     |   ||   | | ||     ||  |||  
GTGGAGCTCCTGAACCTGATTGGGCATCGCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAAggtagaccatacaagcccactctcttgatc-cttgtttatgttatatctgcaaattatttgtttacttttgaatataatttgatgctttacaatgagcatg-

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
TGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgtaagttgtcaaagttcaactgctacatggtttccctttgcttcattggctgctttcttctgtgagtcatgctggcatcacagtttcttcttgttcatca--
||| || |||||||| || ||||||||  ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| || ||||||||||||     |   ||| ||  |  |  ||  ||     |    |  ||   || ||  || ||    | ||  | | |     | ||     ||  |||    
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataat--ttgtaaggatgcttgacaatgagcatggcg

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 15
TGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgta---agttgtcaaagttc--aactgctacatggtttccctttgcttcattggctgctttcttctgtgagt-catgctggcatcacagtttcttcttgttcatca
||| || || |||||||||||||| || |||||||| || ||||||||||| || ||||||||||||||||| |||||||||||||| |||||||| ||||||   | |   || |  ||  || ||||       |     | |  ||  |  |  |   ||| ||  ||  | |   |   ||   |    || |         
TGGAGCTCCAGAACCAGACTGGGCTTCTTTAAATCTGGGGGTTCTTGTCTGTATCGAATGTTCTGGTGTTCACCGTAATCTTGGTGTGCATATATCTAAGgtaaaaaatctccagaactcttaattgcttagaaaatatatgtaggctctataacaaccaacttatggaaggacgtaaagaagtccatgagaattttgaa------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724222|gb|EE099871.1|EE099871
EST:     GCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAA                         GTAAGATCGCTGACACTTGATGTTAAAGTGTGGGAGCCTTCTGTATTAACT
genomic: GCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgtaagttgtc ... ttgattgcagGTAAGATCGCTGACACTTGATGTTAAAGTGTGGGAGCCTTCTGTATTAACT