Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCGTCCGAGCTGCAAAGAGAGCATGCTACAGATCCACTGCAATGGCTGCAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttcatcgaatcacctgtttaatatgtgcctaccaaatagttttcgattttgagatcttcaacaatcaaatgttttcagggaaacaatggggctatataaattttttccctttctcatcag

Basic information

species Vitis vinifera
transcript Vv01s0146g00310.t01
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110403674|gb|EC969358.1|EC969358
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110422451|gb|EC988776.1|EC988776
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110378632|gb|EC943772.1|EC943772
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAA
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAA
EST: gi|110391037|gb|EC955989.1|EC955989
EST:     CAACTGCTTGACATTTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110371230|gb|EC935083.1|EC935083
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110370229|gb|EC929160.1|EC929160
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110687324|gb|EE064645.1|EE064645
EST:     CAACTGCTTGAGATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110387837|gb|EC952535.1|EC952535
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110727373|gb|EE104060.1|EE104060
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAAATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110428620|gb|EC995097.1|EC995097
EST:     CAACTGCTTGAGATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
EST: gi|110385791|gb|EC950347.1|EC950347
EST:     CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAG                         GTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG
genomic: CAACTGCTTGACATCTTCCAAGATTAGTTCAGATACATATCCAACTCTAGgttagtttca ... ttctcatcagGTAGGAAGGAAATGGTTGTTAAATAACTCGAGAAACACTGGACAGAGGCGG