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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCAGAGAAATACCTTGGAGATTTAGAAACATGGGAAAAAGCTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgcaataaattatcctgtaccatttctatatttgatgttctcttgcttattatctgagtcatgctgtacag

Basic information

species Vitis vinifera
transcript Vv01s0026g00340.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 15
AGGCCAGAGAAATACCTTGGAGATTTAGAAACATGGGAAAAAGCTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgcaataaattatcctgtac-catttctatatttgatgttctc-ttgcttattatctgagtcatgctgtacag
||||||||||| |||||||||||||| ||||||||||| |||||||| || |  ||||  |||||| | ||      ||| ||||| |  | ||||   |||  |    || |    ||| |   | |||     | ||   | ||  || | || | ||   |  ||  |||
AGGCCAGAGAAGTACCTTGGAGATTTGGAAACATGGGATAAAGCTGAAGCGGATCTCAAAGAAGCTATAGAAGCTTTTGGAAAGCCATTAGTGgta---ttgtcacttgttgttgaatactcgagtttattcacaaagtctgcattcattctaatgtaagctgttttg-gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30325956|gb|CD009218.1|CD009218
EST:     CTGAGGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGAAGCCGTGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
EST: gi|30325105|gb|CD008367.1|CD008367
EST:     CTGAGGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGAAGCCGTGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
EST: gi|32268540|gb|CD717699.1|CD717699
EST:     CTGAGGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGAAGCCGTGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
EST: gi|30323442|gb|CD006704.1|CD006704
EST:     CTGAGGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGAAGCCGTGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
EST: gi|32249386|gb|CD715205.1|CD715205
EST:     CTGAGGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGAAGCCGTGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
EST: gi|22011637|gb|BQ796671.1|BQ796671
EST:     CAGAGTGGGAAGCCATGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
EST: gi|110360907|gb|EC924350.1|EC924350
EST:     CTGAGGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGAAGCCGTGGGAG                         ATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
EST: gi|156735898|gb|EV240019.1|EV240019
EST:     CTGAAGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGGAGCCGTGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGGACCAA-GATAGACATTAGTGT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGG-ACCAAAGATAGACATTAGTGT
EST: gi|30327091|gb|CD010353.1|CD010353
EST:     CTGAGGCTGCACTCACGGAAGCTTTGAATCAGAGTGGGAAGCCGTGGGAG                         ATAGATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT
genomic: CTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGgtaatattgc ... tgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTT