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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATAGCTTCTGAGAATCATCCAGTGCGGTGGAATACTCCTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgtaatgttcatagaaatatatagcatctaaaacattggcaatatctttattccatcatataccatttcaaaacaaacatttaatgttgatgtgccatatatgcag

Basic information

species Vitis vinifera
transcript Vv01s0010g00690.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g00690.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: PP1S256_41V6.1 (Physcomitrella patens), 5'ss of exon 16
GTGATAGCTTCTGAGAATCATCCAGTGCGGTGGAATACTCCTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgtaatgttcatagaaatatatagcatctaaaacattggcaatatctttattccatcatataccatttcaaaacaaacatttaatgttgatgtg-ccatatatgcag
 | || || ||  |     |  | |||  ||||| ||||||| | |||||||| ||||||||||| ||||||||    || || ||| | |||  |     | | || |  |   |||     | |    || |||  |   |||   |     | |     ||  |||  |   |  |  || || ||||||   
ATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTGgtatgggcaggaaatatcttcattgtctcctttagttttgatgtctacaa--cattgcacggt-tcttggtgcatccatacagcatgtacttgaccgtatatg---

upper sequence: Vv01s0010g00690.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ20792 (Selaginella moellendorffii), 5'ss of exon 15
GTGATAGCTTCTGAGAATCATCCAGTGCGGTGGAATACTCCTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgta-atgttcatagaaatatatagcatctaaaacattggcaatatctttattccatcatataccatttcaaaacaaacatttaatgttgatgtgccatatatgcag
|| || ||    ||     |  | ||| ||||||  |||||||||||||||||||| |||||||| |||||||     || || ||| | |||   | ||||| |  |  |     || |  |  ||  |  |  ||  |    ||    | || |  |||                                   
GTAATTGCCAACGACGGCGACTCCGTGAGGTGGATCACTCCTTTGGGACTTCCTGTCGTGCAACCATACCGCAGGCCCGGGAGACATGTGgtatgcgatcatatactttgacgt--tccaccatcttctcgttggctc-acatgattgatttccttcgcaag----------------------------------

upper sequence: Vv01s0010g00690.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: EFJ32457 (Selaginella moellendorffii), 5'ss of exon 15
GTGATAGCTTCTGAGAATCATCCAGTGCGGTGGAATACTCCTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgta-atgttcatagaaatatatagcatctaaaacattggcaatatctttattccatcatataccatttcaaaacaaacatttaatgttgatgtgccatatatgcag
|| || ||    ||   | |  | ||| ||||||  |||||||||||||||||||| |||||||| |||||||     || || ||| | |||   | ||||| |  |  |     || |  |  ||  |  |  ||  |    ||    | || |  |||                                   
GTAATTGCCAACGACGGTGACTCCGTGAGGTGGATCACTCCTTTGGGACTTCCTGTCGTGCAACCATACCGCAGGCCCGGGAGACATGTGgtatgcgatcatatactttgacgt--tccaccatcttctcgttggctc-acatgattgatttccttcgcaag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581209|gb|CB003904.1|CB003904
EST:     CTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTT                         ATTAAGACTTCACTTCAGGTGTTGAGCCTACAACGAGAAACTGATAAG
genomic: CTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgtaatgttca ... atatatgcagATTAAGACTTCACTTCAGGTGTTGAGCCTACAACGAGAAACTGATAAG
EST: gi|27581087|gb|CB003782.1|CB003782
EST:     CTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTT                         ATTAAGACTTCACTTCAGGTGTTGAGCCTACAACGAGAAACTGATAAG
genomic: CTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgtaatgttca ... atatatgcagATTAAGACTTCACTTCAGGTGTTGAGCCTACAACGAGAAACTGATAAG
EST: gi|27579010|gb|CB001705.1|CB001705
EST:     CTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTT                         ATTAAGACTTCACTTCAGGTGTTGAGCCTACAACGAGAAACTGATAAG
genomic: CTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTgtaatgttca ... atatatgcagATTAAGACTTCACTTCAGGTGTTGAGCCTACAACGAGAAACTGATAAG