Sequence
atgc intronic sequence ATGC exonic sequenceTGATAAGGAAGCTGAACATGGAAAAAAGGTTATTCCAATGAATAACTTATTAGCTGGCAAAACTCGCAAGGAAGCATCAAGGATGTTTTTTGAAACATTGgtatgtttatctgaactttcttctttagaccaaattgagaagttagggtatattttacctttgtttttgcatcagctactgggttcttggagttcattat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0220g00080.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os01g67250.2 (Oryza sativa), 5'ss of exon 12
TGATAAGGAAGCTGAACATGGAAAAAAGGTTATTCCAATGAATAACTTATTAGCTGGCAAAACTCGCAAGGAAGCATCAAGGATGTTTTTTGAAACATTGgtatgtttatctgaactttcttctttagaccaaattgagaagttagggtatattttacctttgtttttgcatcagctactgggttcttggagttcattat-------
|||| ||||| ||| | |||| |||| | | | || || | | ||| ||| || ||| | || ||||||||||||||||||||||| ||||||||| | | ||||| || | | | |||| | || ||| | | | | | | | | | || || | | | ||| ||
TGATGAGGAATCTGGTCTGGGAAGAAAGAGTGTGGCCATTGATCATCTGTTAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggttatgcttttctgtttc---tccactcaagaaat---ggaatacctaccttcagctccagtgtga-ttggaggcacctagaattgcatgatcaagaat
upper sequence: Vv00s0220g00080.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G38310.1 (Glycine max), 5'ss of exon 15
TGATAAGGAAGCTGAACATGGAAAAAAGGTTATTCCAATGAATAACTTATTAGCTGGCAAAACTCGCAAGGAAGCATCAAGGATGTTTTTTGAAACATTGgtatgtttatctgaactttcttctttagac-caaattgagaagttagggtatattttacctttgtttttgcatcagctactgggttcttggagttcattat
||||||||||| | |||||||| |||| | | | | || ||||||| ||| ||||| || ||||||||||| |||||||||||||||| ||||||| | | ||| | || || || ||| | ||| || || | | | || || | | | | | || | || || ||
TGATAAGGAAGATCTACATGGAAGGAAGGAGCTGCATCTTGACAATTTATTAGTTGGTAAAACACGGAAGGAAGCATCTCGGATGTTTTTTGAAACTCTGgtatgctgttgagaatcattttacatatacatttattctatatttatagtctaatgatcttgtggcattaatttaacattttcatgtttaggatt-ataat
upper sequence: Vv00s0220g00080.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA18G48020.1 (Glycine max), 5'ss of exon 19
TGATAAGGAAGCTGAACATGGAAAAAAGGTTATTCCAATGAATAACTTATTAGCTGGCAAAACTCGCAAGGAAGCATCAAGGATGTTTTTTGAAACATTGgtatgtttatctgaactttcttctttagaccaaattgagaagttagggtatattttacctttgtttttgcatcagctact-gggttcttggagttcattat
|||||||||| | |||||||| ||||| | | | || || ||||||| ||| ||||| || ||||||||||| |||||||||||||||| ||||||| | | ||| | | | || || | ||| | || | | || | || ||| |||| | | || | | | ||
-GATAAGGAAGATCTACATGGAAGAAAGGAGTTGCATCTTAACAATTTATTAGTTGGTAAAACACGGAAGGAAGCATCTCGGATGTTTTTTGAAACTCTGGtatgctgttgagaattattctacatatacaacatttattgtctaatgatcttgttggcattaatttaacatctcatgtttaggattataataattgaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34549915|gb|CF518147.1|CF518147EST: TAGCTGGCAAAACTCGCAAGGAAGCATCAAGGATGTTTTTTGAAACATTG GTACTTAAAACTAGGGATTACATACAAGTGGAACAGG
genomic: TAGCTGGCAAAACTCGCAAGGAAGCATCAAGGATGTTTTTTGAAACATTGgtatgtttat ... tgttttgcagGTACTTAAAACTAGGGATTACATACAAGTGGAACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATAAGGAAGCTGAACATGGAAAAAAGGTTATTCCAATGAATAACTTATTAGCTGGCAAAACTCGCAAGGAAGCATCAAGGATGTTTTTTGAAACATTGgtatgtttatctgaactttcttctttagaccaaattgagaagttagggtatattttacctttgtttttgcatcagctactgggttcttggagttcattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga