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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatcagtagtaatggtttatggattgtaaacagctagagtagatgagcttgataagacagcaatcacaacc...

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 12
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgt---atgctattgccagatatatgctttgacc-atcagtagtaatggtttatggattgtaaacagc-tagagtagatgagcttgataa-----gacagcaatcacaacc---------
                  ||||||| |||||||| |||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||   |  |   |||  |  || || ||| ||   ||||  || | | |      ||| |   | | |  | || |  |||| || || |   ||      | |  | ||||  | |         
------------------GCCATGATGTGGAGGAATATGCAAAACAGTTCCCCACAATTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTAAGAAACTTTGAATGGAACAGCAAGgtat-tgtcctgacagataaattggctccatttttttttagcatgctgcatgcagtatattagttgcctaggccttggctccgatcatgaaccatgtttac

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatc-agtagtaatggtttatggattgtaaacagctaga-gtagatgagcttgataagacagcaatcacaacc----------------------------------------
          ||||||||||||||| || ||||| | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  | |||  |  |   | | |||  ||  ||  |  |||  | |||  || |    |  |       ||  ||  | | |  |       | | ||   |                                            
----------AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatc-agtagtaatggtttatggattgtaaacagctaga-gtagatgagcttgataagacagcaatcacaacc-------------------------------------------
          ||||||||||||||| || ||||| | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  | |||  |  |   | | |||  ||  ||  |  |||  | |||  || |    |  |       ||  ||  | | |  |       | | ||   |                                               
----------AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt-gccagatatatgct----ttgaccatcagtagtaatggttta---tggattgtaaacagctagagtagatgagcttgataagacagcaatcacaacc---------
                 |||| ||| || |||||||||||||| ||||| ||||| ||||| ||||| |||| |||||||||| ||||||| | |   | | |   | |     || |||  | |    || ||      |   | | |||||   |   |  |   |   |     | ||  | |||| |||     |  ||  |           
----------------CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattgg-ttgacaaggtcatagacaagaggtagttagcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781461|gb|FQ468305.1|FQ468305
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352781319|gb|FQ467765.1|FQ467765
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|110709476|gb|EE084971.1|EE084971
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352768597|gb|FQ467809.1|FQ467809
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|349827018|gb|FQ419109.1|FQ419109
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|29785535|gb|CB342622.2|CB342622
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|352769659|gb|FQ468587.1|FQ468587
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352780960|gb|FQ466273.1|FQ466273
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|110361521|gb|EC925002.1|EC925002
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352763948|gb|FQ465398.1|FQ465398
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352769305|gb|FQ471454.1|FQ471454
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352777762|gb|FQ466815.1|FQ466815
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|110379633|gb|EC944843.1|EC944843
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|29784993|gb|CB341601.2|CB341601
EST:     CCAACAATTGGATTTGAGAAAGGATCCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGATCAA-TGATGATCCAAGTAAATGCAAGTGAAGGA
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGC-CAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|27578509|gb|CB001204.1|CB001204
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|32250249|gb|CD716068.1|CD716068
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|110383823|gb|EC948224.1|EC948224
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|351030429|gb|FQ432367.1|FQ432367
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|352781813|gb|FQ469111.1|FQ469111
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|18458459|gb|BM436737.1|BM436737
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|30126288|gb|CB911627.1|CB911627
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30126288|gb|CB911627.1|CB911627
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30126288|gb|CB911627.1|CB911627
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30126288|gb|CB911627.1|CB911627
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30126288|gb|CB911627.1|CB911627
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|27585840|gb|CB008535.1|CB008535
EST:     AATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: AATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|45771466|gb|CN007318.1|CN007318
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|110361068|gb|EC924521.1|EC924521
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|83275764|gb|DV939772.1|DV939772
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352773362|gb|FQ470949.1|FQ470949
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352777748|gb|FQ466801.1|FQ466801
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|352768238|gb|FQ469413.1|FQ469413
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|46911083|gb|CN546458.1|CN546458
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352768986|gb|FQ468177.1|FQ468177
EST:     CCAACAATTGGATTTGAGAAAGAAACCCTGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|37187031|gb|CF606384.1|CF606384
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAA--T--                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|110363609|gb|EC927210.1|EC927210
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|110413717|gb|EC979522.1|EC979522
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352765218|gb|FQ465915.1|FQ465915
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352774202|gb|FQ474725.1|FQ474725
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|32461134|gb|CD802308.1|CD802308
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGGACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352781311|gb|FQ467757.1|FQ467757
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352767846|gb|FQ466055.1|FQ466055
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|32246995|gb|CD712814.1|CD712814
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|352776557|gb|FQ474859.1|FQ474859
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352776557|gb|FQ474859.1|FQ474859
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352776557|gb|FQ474859.1|FQ474859
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352776557|gb|FQ474859.1|FQ474859
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352776557|gb|FQ474859.1|FQ474859
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352782190|gb|FQ470092.1|FQ470092
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|29785493|gb|CB342547.2|CB342547
EST:     CAACAATTGGATTTGAGATCNAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCA-GATCGATC
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAG-T-GAAG
EST: gi|352773661|gb|FQ472443.1|FQ472443
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352772663|gb|FQ472138.1|FQ472138
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352769248|gb|FQ471397.1|FQ471397
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|352772602|gb|FQ472077.1|FQ472077
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|29785469|gb|CB342488.2|CB342488
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
EST: gi|351013925|gb|FQ434077.1|FQ434077
EST:     CAACAATTGGATTTGAGAAAGAAACCATGAAATACAAGAACTAATAACAG                         GCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAAGA
genomic: CAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGT-AGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGA
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAG                         A
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacag-
EST: gi|352768543|gb|FQ467499.1|FQ467499
EST:     CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATG---                         -CACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG
genomic: CCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt ... tgcagaacagGCACTTCGAGCATAAGCCAAATGATGTTCCAAGTAAATGCAAGTGAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatcagtagtaatggtttatggattgtaaacagctagagtagatgagcttgataagacagcaatcacaacc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC