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CGCTAAGCACTATGAAACTGGAGAAACACTACCTGAAGATGTGTATTTGAAACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaaaatgtttatatgttgtcttacttgtttgcctgtgcattttagtattagcatatcttttcatattaacttcatttaggatatcatgtgtca...
species | Vitis vinifera |
transcript | Vv00s0211g00060.t01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AACTCGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAG ATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGTEST: gi|26263230|gb|CA814293.1|CA814293
genomic: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaa ... aattttgtagATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
EST: AACTCGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAG ATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGTEST: gi|33408872|gb|CF214499.1|CF214499
genomic: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaa ... aattttgtagATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
EST: AACTCGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAG ATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGTEST: gi|71887581|gb|DT036636.1|DT036636
genomic: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaa ... aattttgtagATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
EST: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAG ATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGTEST: gi|77579724|gb|DV218723.1|DV218723
genomic: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaa ... aattttgtagATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
EST: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAG ATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGTEST: gi|110386136|gb|EC950712.1|EC950712
genomic: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaa ... aattttgtagATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
EST: AACTCGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAG ATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGTEST: gi|33408956|gb|CF214583.1|CF214583
genomic: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaa ... aattttgtagATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
EST: AACTCGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAG ATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
genomic: AACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaa ... aattttgtagATAAGATTTGCAACTGTGGATTTGGAGCTGCATTCAAAGTATGTGCCAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTAAGCACTATGAAACTGGAGAAACACTACCTGAAGATGTGTATTTGAAACTTGTTGCAGCAAGGACTTTTCGTGCCGGGTCCCTTAGTCTTCGTCAGgtcagtgcaaaatgtttatatgttgtcttacttgtttgcctgtgcattttagtattagcatatcttttcatattaacttcatttaggatatcatgtgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaat