Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccatgtagcccttgttgctattcgtttttgtatcacacttgaactcattataaaaagtttgacttttggctgctctccttcccatggtccactggagctttgatattcatatagctgtaatctgtctaaatcttaccag

Basic information

species Vitis vinifera
transcript Vv19s0015g01730.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 14
GGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccatgtagcccttgttgctattcgtttttgtatcacacttgaactcattataaaaagtttgacttttggctgctctccttcccatggtccactggagctttgatattcatatagctgtaatctgtctaaatcttaccag-
 |||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||    | | | | | ||| || |   ||| |   ||    |      | ||  ||   | || | | |    ||||    |     |  |    ||    | |||| ||||| |   |        | |  | |||  ||| 
-GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGtaagtgactattgtcttggttcctctatatttcttgctctttttc-----ctttgcaatgtgattaattctctcttgcttctttctttttattatgttgt--ttatgattttcatttgatt--------tttgcaccttttcagg

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 14
GGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccatgtagcccttgttgctattcgtttttgtatcacacttgaactcattataaaaagtttgacttttggctgctctccttcccatggtccactggagctttgatattcatatagctg-taatctgtctaaatcttaccag
||||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||| || |||||||||||||||||    |   | | | ||| || |   | | | |   |   ||    | | | | |  | ||     | | ||| || || ||    ||   |  |  |    || | ||||| |    | |  ||  | | |          
GGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTgtaagtgactaatgtcttagttcctctgtatctct-tgctaattttctttttactgtgattaattc--tctcttgcttctttctttttattgtgtcgtttaaa---tggttttcatttgatcgctgctccttttcag---------

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 11
GGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccatgtagcccttgttgctattcgtttttgtatcacacttgaactcattataaaaagtttgacttttggctgctctccttcccatggtccactggagctttgatattcatatagctgtaatctgtctaaatcttaccag
| ||||||||||||||||| |||||||| ||  || ||||||||||||||||||||||||| |||||||| |||||| |||| |||||    |   |||  ||||| | ||| | | | ||||| |  |     ||||        | | | |||  | |||| || |||   |  |  ||   |    |||| | ||||||  | ||  || ||   || || ||||
GTAATTCAGCTGTTCAAGCAATTTCTTTGCTTTTAAAGAAGGGTGTACCAGAGTCCAACATTATATTTCTCAATCTCGTATCAgtaagttacttgtgcc--tgttgttgttcctctgtatatcatatatcttgccatttctt----tgttattttctgttgct-tctttcttttcttgtacctaa----tgatttgcatatatatatatgctctc---atattgccag

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 14
GGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccatgtagcccttgttgctattcgtttttgtatcacacttgaactcattataaaaagtttgacttttggctgctctccttcccatggtccactggagctttgatattcatatagctgtaatctgtctaaatcttaccag
| ||||| || ||| |||| |||||||| ||  || |||||||||||||||||||||||||  ||||||| |||||| |||| |||||      ||    |   || | ||| | | | ||||| |  |   ||    ||      | | | |||  | ||||   |||    | || | ||   | ||||     ||||||  || |  || ||   || || ||||
GTAATTCGGCAGTTGAAGCAATTTCTTTGCTTTTAAAGAAGGGTGTACCAGAGTCCAACATTTTATTTCTCAATCTCGTATCAgtaagt-----tacttgtgtctgttgttcctctgtatatcatatat---cttgccattttttttgtcattttctgttgcttgtcttttt-tagtac-ctaatgttttg-----catata--tgcatgctctc---atattgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818455|gb|FQ401069.1|FQ401069
EST:     TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT                         GCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
genomic: TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccat ... atcttaccagGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
EST: gi|349825804|gb|FQ423099.1|FQ423099
EST:     TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT                         GCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
genomic: TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccat ... atcttaccagGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
EST: gi|349832612|gb|FQ421970.1|FQ421970
EST:     TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT                         GCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
genomic: TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccat ... atcttaccagGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
EST: gi|349808312|gb|FQ405456.1|FQ405456
EST:     TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT                         GCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
genomic: TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccat ... atcttaccagGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
EST: gi|349824583|gb|FQ413250.1|FQ413250
EST:     TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT                         GCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
genomic: TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccat ... atcttaccagGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
EST: gi|349809963|gb|FQ398588.1|FQ398588
EST:     TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCCGAATCTCATATCT                         GCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
genomic: TACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccat ... atcttaccagGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
EST: gi|34362426|gb|CF404011.1|CF404011
EST:     AGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT                         GCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT
genomic: AGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTgtaagcccat ... atcttaccagGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATT