1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CAGCAAGCAAGCATATATGCGTGGCAAGAGGGTGCTTGAGATAAACCCAAGGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgttttagagacttttttgtcatttacttaattgtctatgcatttcttataacctggttatgtaggagcatggcacacttaaaatgtatctttatga...
species | Vitis vinifera |
transcript | Vv18s0001g14500.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|110689117|gb|EE065061.1|EE065061
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|110399268|gb|EC965766.1|EC965766
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|33401642|gb|CF207269.1|CF207269
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|33410380|gb|CF216007.1|CF216007
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|30297638|gb|CB974432.1|CB974432
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|28970695|gb|CB349728.1|CB349728
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|33401721|gb|CF207348.1|CF207348
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|22009174|gb|BQ794208.1|BQ794208
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|33410302|gb|CF215929.1|CF215929
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|110415390|gb|EC981295.1|EC981295
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|83275613|gb|DV939621.1|DV939621
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: CAAGGAG-TTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|110719823|gb|EE095290.1|EE095290
genomic: CAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTANTAAAGGACAGTGAG GATGAAGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|294966850|gb|GW839725.1|GW839725
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGEST: gi|110419250|gb|EC985463.1|EC985463
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
EST: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAG GATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
genomic: GGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgtttta ... ttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCAAGCAAGCATATATGCGTGGCAAGAGGGTGCTTGAGATAAACCCAAGGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtatgttttagagacttttttgtcatttacttaattgtctatgcatttcttataacctggttatgtaggagcatggcacacttaaaatgtatctttatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT