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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatacaatatgggattttgttgaccaacatttttgcagaaaattatgaataatgggacaaaggtgtattccacctctttatagagtgatatctaacgtcatttgcactgttttaaccaatgctag

Basic information

species Vitis vinifera
transcript Vv18s0001g12560.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349811010|gb|FQ405998.1|FQ405998
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|110384138|gb|EC948555.1|EC948555
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|28968713|gb|CB347746.1|CB347746
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|33404093|gb|CF209720.1|CF209720
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|110382391|gb|EC939356.1|EC939356
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|33404176|gb|CF209803.1|CF209803
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|351014223|gb|FQ434812.1|FQ434812
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|33402192|gb|CF207819.1|CF207819
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
EST: gi|33402179|gb|CF207806.1|CF207806
EST:     CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG                         GATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA
genomic: CTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAGgtaataatac ... ccaatgctagGATGCTGTATCAAAGGATTCAAGCTTATATAGCATAATGAGTATCTTGGCA