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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgttagaatgctttctccattccattcatataataataggtcatcttctttgctattagtaaacttgtggaaattctcag

Basic information

species Vitis vinifera
transcript Vv18s0001g11060.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 14
TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgttagaatgctttctccattccattcatataataataggtcatcttctttgctattagtaaacttgtggaaattctcag---------
||| ||||||||||| |||||  ||||| | ||||||||||| || ||||||||||| ||||| || |||||||| ||||||||||||||  | || |||||||       |||   | |  |     ||    ||   | |  | || | | |||   || | |||      | |  |         
TCCTGATCCCACAGGACTTCGCACTCGTCTGGAACAATGGACTTTAGGTCTTTACCCTGCATGCATTAAGTACCTGATGTCTGCATTTGACATCCCTGAGgttat----tcttcataaatataccagaatcgctatttctgagttcctgtaccattttcaaccctgtaatgtatatttgctatttcag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 10
TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgttagaatgctttctccattccattcatataataataggtcatcttctttgct-attagtaaacttgtggaaattctcag------
||| ||||||||||| ||||| |||||| | || || ||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||  | |||||||||       ||| |    |  | | | || ||    | |  |  |  ||| |      | |    ||  | ||||||        
TCCTGATCCCACAGGACTTCGCGCTCGTCTCGAGCATTGGACCTTTGGACTTTACCCTGCATGTATTAAGTACCTCATGTCTGCATTCGACATCCCAGAGgttcttccattttttaagctgtaatgagatcatttctgattgttgttgttgtttgccgcttacgccgtatatattctctctttcag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 13
-TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgttagaatgctttct---ccattccattcatataataataggtcatcttctttgctatt-agtaaacttgtggaaattctcag
 ||| ||||| || || ||  |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  | |||||||| |||||||| |||||||| || |   | | |     |||  |||  |    |      | ||      ||  |   ||     ||       |||||| 
TTCCTGATCCAACTGGACTCAGAGCTCGTATCGAACAATGGACATTTGGACTTTATCCGGCATGTATCAAGTATTTAATGTCTGCTTTTGATGTGCCAGAggtgagtaaattctttgaattattttatttttgacttttcttataatggatcctgtcacggagatggttttctatttttctca-

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 13
TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgttagaatgctttct---ccattccattcatataataataggtcatcttctttgctatt-agtaaacttgtggaaattctcag
||| ||||| || || ||  |||||||||| ||||||||||||||||| |||||||||||||||||||||||  | ||||| || |||||||| |||||||| || |   | |||     |||  |||  |    ||     | ||     |||  |   ||     ||       |||||||
TCCCGATCCAACTGGACTCAGAGCTCGTATTGAACAATGGACATTTGGACTTTACCCGGCATGTATCAAGTATTTAATGTCAGCTTTTGATGTGCCAGAGgtgagtaatttctctgaattattttatttttgacttatcttataatggatcttgtcacggagatggttttctatttttctcag

upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 14
TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgt---tagaatgctttctccattccattcatataataataggtcatcttctttgctattagtaaacttgtggaaattctcag---
 ||||| || || ||||||||||| ||||| |||||||||||||||||  | || || || || |||||||| || ||||| |||||||||||||| |||||   ||   | || | | |  ||  |   |  | |||      |||   ||||  |    | ||| || | |  ||  ||    
CCCGGACCCTACTGGCCTTCGAGCCCGTATCGAACAATGGACATTTGGCTTATATCCTGCGTGCATCAAGTATCTTATGTCAGCATTTGATGTTCCTGAGgtaaataatgtactgtgttctgtctctgttttgattaaccaaagatcccatttgaaac--atcaacctgagtactttaacatcag