1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CTTACATCTAGGGGATTTGTTGAGGAGGATTTTGTGAAAGTAGCCGAGTTATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAGgttattgattctgtaaccatcagttagagactcgtcaatcttgtctatgttgtgatgatgtctaatgagaaatatctattgcttcacttgtatgcttactgtactcatcttggattatcataaaaccag
species | Vitis vinifera |
transcript | Vv18s0001g07960.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAG GAACAAAGTTGAAGGACTTTGTGGCAACCATGCAGTCAGATGCCGAAACTCEST: gi|351022221|gb|FQ438806.1|FQ438806
genomic: ATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAGgttattgatt ... ataaaaccagGAACAAAGTTGAAGGACTTTGTGGCAACCATGCAGTCAGATGCCGAAACTC
EST: ATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAG GAACAAAGTTGAAGGACTTTGTGGCAACCATGCAGTCAGATGCCGAAACTCEST: gi|351043008|gb|FQ434449.1|FQ434449
genomic: ATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAGgttattgatt ... ataaaaccagGAACAAAGTTGAAGGACTTTGTGGCAACCATGCAGTCAGATGCCGAAACTC
EST: ATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAG GAACAAAGTTGAAGGACTTTGTGGCAACCATACAGTCGGATGCCGAAACTC
genomic: ATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAGgttattgatt ... ataaaaccagGAACAAAGTTGAAGGACTTTGTGGCAACCATGCAGTCAGATGCCGAAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTACATCTAGGGGATTTGTTGAGGAGGATTTTGTGAAAGTAGCCGAGTTATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAGgttattgattctgtaaccatcagttagagactcgtcaatcttgtctatgttgtgatgatgtctaatgagaaatatctattgcttcacttgtatgcttactgtactcatcttggattatcataaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG