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TTGTGAAGAGCTTCTCTTCTGGTAAAAGAGAAGGTGGAGATTTTGTTGCAGCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgcttaaatgaagtgctgtgctcttaatgtcatactttttatctatttccattaagtaaatctagttctttacttgtttgcaataaataagtaat...
species | Vitis vinifera |
transcript | Vv17s0000g08930.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAG GAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAEST: gi|33403518|gb|CF209145.1|CF209145
genomic: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgctt ... tcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
EST: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAG GAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAEST: gi|110430180|gb|EC996718.1|EC996718
genomic: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgctt ... tcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
EST: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAG GAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAEST: gi|110686642|gb|EE064514.1|EE064514
genomic: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgctt ... tcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
EST: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAG GAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAEST: gi|110387409|gb|EC952071.1|EC952071
genomic: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgctt ... tcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
EST: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAG GAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAEST: gi|110368460|gb|EC932437.1|EC932437
genomic: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgctt ... tcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
EST: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAG GAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAEST: gi|110687493|gb|EE064965.1|EE064965
genomic: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgctt ... tcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
EST: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAG GAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
genomic: GCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgctt ... tcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAAGAGCTTCTCTTCTGGTAAAAGAGAAGGTGGAGATTTTGTTGCAGCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGgtatttgcttaaatgaagtgctgtgctcttaatgtcatactttttatctatttccattaagtaaatctagttctttacttgtttgcaataaataagtaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataag